Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq206718 125 2e-23 seq210340 122 3e-22 seq143833 89.7 2e-12 seq141468 84.2 6e-11 >seq206718 Length=6464 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 3018 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 3077 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 3078 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 3137 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | || ||| |||| || | || | || || || Sbjct 3138 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 3197 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || ||||| |||| || | || | | | Sbjct 3198 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 3256 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 3257 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 3316 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| || || || | |||||| Sbjct 3317 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 3357 >seq210340 Length=2907 Score = 122 bits (134), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 418 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 359 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||||||||| |||||| || || || ||||| || || || | | ||| || Sbjct 358 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGGCCTTCCCTACCTCC 299 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || || | || |||| || || Sbjct 298 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 239 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || || ||||||| || | || | | | Sbjct 238 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTACGGTCTATGA- 180 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 |||| ||||| || || || || ||||| ||||||||||| | || | | ||||||| | Sbjct 179 AGCCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 120 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | | ||| ||||| || || || | |||||| Sbjct 119 ATATATTGATAAAACTTCCCTTCGATCCGGCTGTAACCATA 79 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 1113 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 1054 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 1053 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 1017 >seq143833 Length=506 Score = 89.7 bits (98), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||| ||||| ||| ||||| ||||| || ||||| | ||| || || | | Sbjct 374 TACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCA 433 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 434 GCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATAT 478 >seq141468 Length=1202 Score = 84.2 bits (92), Expect = 6e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 251476 AAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCA 251535 ||| ||| ||||| || | |||||| ||||| || ||||| || || || || |||||| Sbjct 874 AAGTGAGCAGCACCATGGGCAATCATGCAATCTCGTTCCATCTCTCCAAACCGTAGACCA 933 Query 251536 CCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAG 251595 ||||| |||| || ||||| |||||||| | || ||| | | |||||| Sbjct 934 CCATCACGAGACCGTCCCTCAGCAGGCTGCCTCGTAAGAATTTGTACAGGACCCCGACCA 993 Query 251596 CGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATG 251655 || ||| |||||||| ||||||||||| | | |||||| ||| || || | | Sbjct 994 CGTGAATGGATCTTATCATCAACCATATGCTTCAATCTCTGGTAATATGTAGGGCCAAGG 1053 Query 251656 AAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 || || ||| | || | || || || || | |||||||| Sbjct 1054 AAAATCATCGCACTCAGTCGCCGACCGGTGTGACCATTATACAT 1097 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| || |||||||| ||||| |||||||| || |||| || |||||||||||| Sbjct 882 AGCACCATGGGCAATCATGCAATCTCGTTCCATCTCTCCAAACCGTAGACCACCATCACG 941 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 |||| |||| | | || | || | || | |||||| || |||| ||| Sbjct 942 AGACCGTCCCTCAGCAGGCTGCCTCGTAAGAATTTGTACAGGACCCCGACCACGTGAATG 1001 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || ||||| | |||||||||||||| |||| ||||| Sbjct 1002 GATCTTATCATCAACCATATGCTTCAATCTCTGGTAATA 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467762749871088