Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq169111 104 3e-17 seq130409 104 3e-17 seq17338 89.7 6e-13 >seq169111 Length=3694 Score = 104 bits (114), Expect = 3e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 |||||||||||| | |||||| | ||||||||| || ||| ||||| | ||||| Sbjct 580 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 639 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 ||||| ||| | ||||| || ||||| || |||||||| || ||| ||| || Sbjct 640 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 699 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTGCATATCCAAC 152182 ||| | ||||| |||| | |||| ||| || ||||||||||||||| | |||||| | Sbjct 700 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 758 Query 152183 TTCTGA 152188 || || Sbjct 759 CTCAGA 764 >seq130409 Length=1981 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 1336 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1395 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || ||||| || ||| ||||||| ||| Sbjct 1396 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTC 1455 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| | |||| ||| || ||||||||||||| Sbjct 1456 TGATGGTTCCTTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCT 1514 Query 152173 CATATCCAACTTCTGA 152188 |||| ||| |||| || Sbjct 1515 CATACCCATCTTCAGA 1530 >seq17338 Length=857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||| ||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 504 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 563 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | |||||| |||||||||||||||| || || || || || Sbjct 564 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 622 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 |||||||| ||||| | |||||||| || || Sbjct 623 TTGTGTTGCCTATCCTTCCTCTGATGTTACTCT 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548145124913280