Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq114929 178 3e-40 >seq114929 Length=4696 Score = 178 bits (196), Expect = 3e-40 Identities = 518/789 (66%), Gaps = 44/789 (6%) Strand=Plus/Plus Query 3424 TCAACAATATCGAAGAGCTGGGGCTGGGATTTATCAACTATTCACTGGTGCCGTATCTGA 3483 |||||||||| || | ||||| || |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 3484 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTA 3541 | || || || ||| ||||| || ||| | | | | | | ||| | | Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAAT--A 3425 Query 3542 TTACGCCAAATTTAACGCCGGGGCGTTACTGCGCGGGGATATGAAGTCCCGTTTTGAAGC 3601 ||| || || ||||| || || || | | || || ||| |||| || |||| |||| | Sbjct 3426 TTATGCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 3602 CTACGCCACCGGGATCAACTGGGGAATTTACTC--TCCCAATGACTTCCGCGACCTGGAA 3659 || | || || ||| | ||||| ||| ||| ||| ||||| | || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 3660 GATATGAATCCGCGTCCCGGTGGTGATGTCTATCTCACACCGATGAACATGACCACGAAA 3719 |||||| |||| ||| |||||||||||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 3720 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 3779 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 3780 TCTTGATGTACCGCTGAGTTTGAAATCTGTCAGTGACTCCGGTGAGTTTGAAGGGTATGG 3839 | | |||| ||||| | | ||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 3840 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 3897 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 3898 GCTTCCCTGCGGGCGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 3956 || || || ||| | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 3957 CATGGATGAACCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 4016 |||| || || || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 4017 CAGGGGACGGTTGCTTATTGATGATGATCCCCTCGCAAAACGCGCACATGCACACATGAA 4076 | || || || ||||||||||||||||| | || ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 4077 GGCCGGTTCGTTAACCGGCCTTTCTATTGGGTACGTCCTGAAAGACTGGGAATACGACCG 4136 || || | | || | || ||||| ||| | || ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 4137 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGTCAGTCTGGTGACGTT 4196 |||| || || | || |||||||| || || |||||||| | | |||||| | Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGTGTCTATTGTGACGAT 4050 Query 4197 CCCGTCTAA 4205 || |||| Sbjct 4051 GCCCGCTAA 4059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132259821919456