Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq149362 114 1e-20 seq135156 95.1 1e-14 seq161123 93.3 3e-14 seq16096 82.4 6e-11 >seq149362 Length=6446 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || ||||| ||||| ||||||||||| | ||| ||| || Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || || |||||| |||||||||||| | ||| || | Sbjct 2259 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 2317 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || |||| ||| || || ||||| ||||| | ||| ||| |||| ||||||| Sbjct 2318 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 2377 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| ||||| || || |||| ||||| Sbjct 2378 ACATTCAGAAAGAGTCGACTCTGCATTTGGTG 2409 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || | || || || || || ||| | || ||| Sbjct 1743 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 1802 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | || || |||||| ||||| || || | ||| ||||| Sbjct 1803 CGATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 1862 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||| ||||||| | ||||| | || || ||||| Sbjct 1863 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 1922 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| ||||| || |||||| |||| | ||||||| || |||| Sbjct 1923 CATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGGAA 1972 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| |||| Sbjct 2065 GACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAA 2124 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| | || || |||||||||||||| |||||||| |||||| |||| | Sbjct 2125 GACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCTACCTTGCACTTGGTTCTC 2184 Query 110486 AGACTGCGAGGGGGAA 110501 | ||||| || |||| Sbjct 2185 CGTCTGCGTGGTGGAA 2200 >seq135156 Length=1536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || || || || | ||| ||||||||| ||||||||| ||||| | || ||| Sbjct 1210 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGAT 1151 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| ||||| || |||||| |||| | | ||||| || |||| Sbjct 1150 TACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGGCTGCGTGGAGGAA 1096 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| ||||| Sbjct 2685 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 2626 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| | ||||| |||||||||||||| ||||| || |||||| |||| | Sbjct 2625 GACGGAAGAACTCTTGCGGACTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 2566 Query 110486 AGACTGCGAGGGGGAA 110501 | ||||| || |||| Sbjct 2565 CGTCTGCGTGGTGGAA 2550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || ||||| || || ||||| ||||| | ||| ||| || Sbjct 2551 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 2492 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || || ||| ||| |||||||||||| | ||| || | Sbjct 2491 A-GACACAATTGATAATGTCAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGACC 2433 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || || ||||| ||||||| || ||| |||| ||||||| Sbjct 2432 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 2373 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| || || || || || |||| ||||| Sbjct 2372 ACATACAGAAGGAGTCAACTCTGCATTTGGTG 2341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| ||||| | || ||||| || || ||| |||| || || || Sbjct 3234 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 3175 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || ||||| ||||| || || | ||| || Sbjct 3174 GAC---ACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGAC 3118 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || || | ||| || || ||||| ||||| | | ||||| | || || ||| Sbjct 3117 CAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTAC 3058 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || | ||| ||||| | ||||| || || || Sbjct 3057 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 3008 >seq16096 Length=889 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 |||||||| |||||||| || | |||||||||||||| || | ||| || ||| || Sbjct 367 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 426 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || ||| || || || || | ||| || Sbjct 427 GAC---ACCATTGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGAC 483 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | |||| ||| ||||| ||||| ||||||| || ||| | || || || Sbjct 484 CAGCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTAT 543 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||| || || || ||||| ||||| | | ||||| || || Sbjct 544 AATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411759705238832