Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq115931 179 6e-40 seq129179 125 1e-23 seq130061 87.8 3e-12 >seq115931 Length=8006 Score = 179 bits (198), Expect = 6e-40 Identities = 221/302 (73%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513 || ||||| || || || ||||||||||| || || || || || ||| |||| ||| | Sbjct 6380 GTTACACCTGTTTGACCTTGGTATTTACCACCACGGTCTTTATATGAGGTTTCACAGACT 6321 Query 35514 TCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGC 35573 || ||||| || || |||| ||| ||||||||||| || ||||| | || || || Sbjct 6320 TCATCACTTTCAAAGAACAACATTTGCGCCACACCCTCACCTGCGTAAATTCGTGCAGGA 6261 Query 35574 AGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGC 35633 || || || || || ||||| || || || ||||||||||||||||| || | ||| Sbjct 6260 AGATTTGTTGTATTTGAAAACTCAAGTGTAACGTGACCTTCCCACTCAGGCTCTAAAGGC 6201 Query 35634 GTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGG 35693 || ||||| || || ||||| || ||||| || || |||||||||||| || | Sbjct 6200 GTTACGTTTACAATAATACCGCAACGCGCATAAGTTGACTTACCCAAACAAACAGTCAAT 6141 Query 35694 ACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGA 35753 || ||||| ||||| ||||| ||||||| || || || | ||| || ||| |||||| Sbjct 6140 ACATTGCGTGGAATACGGAAATATTCGATTGTACGCGCTAAAGCAAATGAGTTTGGCGGA 6081 Query 35754 AT 35755 || Sbjct 6080 AT 6079 >seq129179 Length=2549 Score = 125 bits (138), Expect = 1e-23 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA 120285 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 603 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 662 Query 120286 TCCCTGATGCCGGCACCAT 120304 |||| |||||||||||| Sbjct 663 CTCCTGGTGCCGGCACCAT 681 >seq130061 Length=3172 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||| Sbjct 2640 CGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 2581 Query 122665 TCCAACACGACCCACCAGTTTCA 122687 ||| ||||||||||||| |||| Sbjct 2580 TCCCACACGACCCACCATCTTCA 2558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 823696900824960