Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq114929 185 2e-42 seq155237 114 3e-21 >seq114929 Length=4696 Score = 185 bits (204), Expect = 2e-42 Identities = 543/833 (65%), Gaps = 4/833 (0%) Strand=Plus/Plus Query 763 CCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGGCAG 822 || || |||||||| ||||||||| | || || ||| ||| |||||||||| ||||| Sbjct 896 CCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATGAAAATCTCGCTGGAGCCTTGGCAA 955 Query 823 CTATTTGTGATCTGCTGTGCGTTTGGCTGGGT-CAATAAAGGCACCCGGTTG-CGCCGCT 880 ||||| ||| || | ||||| ||| | | | ||| | | |||| || |||| Sbjct 956 AAATTTGGGATAGCTTGCACTTTTGGGTGGATGCGAAAAAAGGAT--GGTTATCGTCGCT 1013 Query 881 TCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCAATCTCTGCCGGTG 940 || | ||| || ||| | || |||||||| || ||||||||||| | || |||| Sbjct 1014 TCAGAGAGAGTTATTGGGAAGTTCCACGTAAGAATGGTAAATCAGCAATTGCGGCTGGTG 1073 Query 941 TTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCA 1000 |||| || | ||||| |||| ||||||||| | || || ||| | ||||| | Sbjct 1074 TTGCACTTAACATGTTTGCGAATGATGGCGAGTTTGGTTCAGAGGTCTATGCAGGTGCAA 1133 Query 1001 CGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACAC 1060 | || |||||||| || ||||| || ||| || || || | ||| | ||| | | Sbjct 1134 CAACTGAGAAACAAGCTTGGGAGGTTTTTAAACCTGCTAGATTAATGGCCATACGATCGC 1193 Query 1061 CCATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCGGAGG 1120 | | | | ||||| || ||| |||| || | | | | || || | Sbjct 1194 CTGAGTTTATTGAAGCTGCAGGTATTTTAATTAATGCAGGTAGCCTTGAAATACCAGATG 1253 Query 1121 ATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTGATGGTTCATCACCCCACTGTG 1180 | || | ||||| ||| | | ||| | || ||||||| ||||| ||||||| Sbjct 1254 AAGGTTCCGTATTTGAGCCGATCACTGGCGATCCTCCTGATGGTCAGTCACCTCACTGTG 1313 Query 1181 CCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAATGCTTACCG 1240 ||||||||||||||| ||| |||||| || || || || ||| |||| || | Sbjct 1314 CCGTGGTTGATGAATTTCATGAGCATCAGACTTCAGCACTATACGACACGATGCAAACAG 1373 Query 1241 GGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATTG 1300 ||||||| || || ||||| || |||| | ||||||| || || || | | |||| Sbjct 1374 GGATGGGTGCTCGCCGTCAACCGATGATATTTACCATCACAACTGCAGGTTTTGATATTG 1433 Query 1301 AGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCTA 1360 | || || || || ||| ||| | || || ||||| || | ||||| Sbjct 1434 AAGGTCCATGTTATGACCTTCGGAGCCGTGTGCAAGAAATGCTATTGGGTACAGTGCCCG 1493 Query 1361 ACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGC 1420 | ||||| || || || || | ||| ||||||| || || || ||||| || || Sbjct 1494 ATGATGAGCTTTTTGGTTGGATATGGACCATTGATGACGGAGATGATTGGACTGATCCAA 1553 Query 1421 AGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAA 1480 | || ||| ||||| ||||| ||| ||| || || |||||| | || | | | | Sbjct 1554 ATGTATTGGCCAAAGCAAATCCTAATTATGGGGTTTCTGTTTATGGTGACTATCTAGAAT 1613 Query 1481 GTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACC 1540 |||||||| || || | | || || | | ||| | ||||| || ||||| | Sbjct 1614 CTCAGCAGCGCCGAGCAATTCAGAATGCTTCTAAGCAAAATGCTTTTAAGACTAAACATC 1673 Query 1541 TCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGCAG 1593 | || | ||||| || | ||| | || |||||||| ||| || |||||| Sbjct 1674 TAAACGTTTGGGTATCTTCTCGTACAGCATATTTCAATATGGAGAAATGGCAG 1726 Score = 170 bits (188), Expect = 5e-38 Identities = 502/765 (66%), Gaps = 44/765 (6%) Strand=Plus/Plus Query 3366 TCAACAATATCGAAGAGCTGGGGCTGGGATTTATCAACTATTCACTGGTGCCGTATCTGA 3425 |||||||||| || | ||||| || |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 3426 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTA 3483 | || || || ||| ||||| || ||| | | | | | | ||| | | Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAAT--A 3425 Query 3484 TTACGCCAAATTTAACGCCGGGGCGTTACTGCGCGGGGATATGAAGTCCCGTTTTGAAGC 3543 ||| || || ||||| || || || | | || || ||| |||| || |||| |||| | Sbjct 3426 TTATGCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 3544 CTACGCCACCGGGATCAACTGGGGAATTTACTC--TCCCAATGACTGCCGCGACCTGGAA 3601 || | || || ||| | ||||| ||| ||| ||| ||||| || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 3602 GATATGAATCCGCGTCCCGGTGGTGATGTCTATCTCACACCGATGAACATGACCACGAAA 3661 |||||| |||| ||| |||||||||||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 3662 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 3721 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 3722 TCTTGATGTACCGCTGAGTCTGAAATCTGTCAGTGACTCCGGTGAGTTTGAAGGGTATGG 3781 | | |||| ||||| | | ||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 3782 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 3839 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 3840 GCTTCCCTGCGGGCGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 3898 || || || ||| | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 3899 CATGGATGAACCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 3958 |||| || || || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 3959 CAGGGGACGGTTGCTTATTGATGATGATCCCCTCGCAAAACGCGCACATGCACACATGAA 4018 | || || || ||||||||||||||||| | || ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 4019 GGCCGGTTCGTTAACCGGCCTTTCTATTGGGTACGTCCTGAAAGACTGGGAATACGACCG 4078 || || | | || | || ||||| ||| | || ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 4079 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGT 4123 |||| || || | || |||||||| || || |||||||| Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGT 4035 >seq155237 Length=1413 Score = 114 bits (126), Expect = 3e-21 Identities = 388/596 (65%), Gaps = 10/596 (2%) Strand=Plus/Minus Query 21763 TCGGTATAAATCCGGCCAATGTACTCGCCCAAAACTCCGATACCAATGAGCTGCACACCA 21822 ||| | || || ||||| ||||| ||||||| || ||||| || || || ||||| || Sbjct 591 TCGATGTAGATGCGGCCGATGTATTCGCCCAGCACCCCGATGCCGATCAGTTGCACGCCG 532 Query 21823 CCGAGAAAAAGTATTGATACCAGCAATGATGGATAACCGCGCACAGGATTCCCGAATGCA 21882 |||| || || || | || || || ||||| || |||| || || |||||| | Sbjct 531 CCGAAGAAGAGGATGGCGGTCATCAGCGAGGGATAGCCCGGCACCGGGTTGCCGAATACC 472 Query 21883 AGCGTATCAATGATCAT---CCAGGCACCGTACAGGAAAGCCAGGCCTGCAACGAACAGG 21939 ||| | | | ||| || |||| | |||| | |||| | | || || Sbjct 471 AGCTTGCGGAACACCATGACCCCGGCATAGGCCAGGGACAGCAGGGCGACGCCGC-CA-- 415 Query 21940 CCAATGTACGTCCACATGCGTAACGGAAATGTTGAGAAGCTGGTAATCCCTTCAAGCGCC 21999 || | || ||||||| | | ||| | || |||| ||| | ||||| | ||| Sbjct 414 CCGAGATAGGTCCACAGCCTGAGCGGCACGGTACTGAAGGAGGTGAAGCCTTCCAAGGCC 355 Query 22000 AGGTTCCAGAGCTTCCAGCCATTAAACTTAGTGCTGCCAGCAACACGCTCAGCGCGAGCA 22059 || ||||| ||||||||||| || ||||| ||||||| || || || || | Sbjct 354 AGATTCCACAGCTTCCAGCCGTTGAACTTGCTGCTGCCGGCGCTGCGTGGGGCACGCTCG 295 Query 22060 TATTCAACAACATCTGTACTCCCA-CCAACCCAGCTCAATACTCCTTTCATGAACAGGTT 22118 || || || || || || | || |||||| | | || |||||||||||||| Sbjct 294 TACTCGACCACCCGGGTG-TCGAAGCCGACCCAGGAGAGGATGCCCTTCATGAACAGGTT 236 Query 22119 GCGTTCTGGTAATAATTTAATGTTTTCCACAACTCCGCGAGACATTAGTCGGAAATCGCC 22178 ||| || || | || ||| ||||| || ||||| ||| || |||||||| || Sbjct 235 GCGCTCGGGCAGGTCCTTGATGGCATCCACCACCTCGCGACTCATCAGCCGGAAATCACC 176 Query 22179 GACGTTCTCCTCAATCTTTGGATTGCTTATTTTATTGTGAAGTTTATAGAACCACTCAGC 22238 ||||||||| || || | | | || |||||| || ||||| | ||| || Sbjct 175 GACGTTCTCTTCGATGGGGGTCTGGGCGATGCGATTGTGCAGGCGGTAGAAGCCCTCGGC 116 Query 22239 AGTCATGCGCTTCAGTCTTCCGTCTGTAGAACGGTCTGAGCGCTTAGCCAGTACCATATC 22298 |||| ||||| || | ||| | ||||| |||||| |||||||||| || Sbjct 115 GGTCAGCCGCTTGAGCGGGCTGTCGCTGCGCCGGTCGACGCGCTTGGCCAGTACCACGTC 56 Query 22299 AGC-ACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATCGGGTCCTGC 22353 || |||||| |||||| || | || | ||||| || || | |||||||||| Sbjct 55 GGCGCCCTGCC-GCCACTGCTCGAGCAGCCGCGGGATGACGTCCAGCGGGTCCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126779451375360