Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq115971 87.8 4e-13 >seq115971 Length=1990 Score = 87.8 bits (96), Expect = 4e-13 Identities = 226/340 (66%), Gaps = 16/340 (5%) Strand=Plus/Minus Query 11453 CTGCTGCCGTGGCTGGCGTGGGCGTTTTCGGTCGACAGGTGGGATGAAAAGTGGCCGGAA 11512 |||||||| | ||||| |||||| ||||| || | ||||| || | | ||| Sbjct 840 CTGCTGCCCTACCTGGCCTGGGCGCGCTCGGTGGATCGCTGGGAC----AGCGACTGGA- 786 Query 11513 GCGACAAAAC---GCGCC--GTTATCCGCGATGCCTATTTCATCCACTGTCATAAAGGCA 11567 |||||| || ||||| || ||| || | ||| ||||| || || |||| Sbjct 785 GCGACACCACCAAGCGCCAGGTGATCAAGTCGGCGCACTTCGTCCACGCCCACAAGGGCA 726 Query 11568 CTATCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCGGCTATCTCATCAACGTGACGGAGT 11627 | |||||||| | || || |||||||| || || ||||| || ||| ||| |||| Sbjct 725 CCATCGGCGCCCTGCGCCGGGTGGTGGAACCCCTGGGCTACCTGATCCGCGTCCACGAGT 666 Query 11628 GGTGGGAAAACAGT--GACCCGCCC----GGCACCTTCCGGCTCGATATTGGTGTACTGG 11681 ||||| | | || |||| || | ||||||||||| || || | || || || | Sbjct 665 GGTGGCAGGAGAGCCCGACCGGCACTCCGGGCACCTTCCGCCTGGACGTCGGCGTGCTCG 606 Query 11682 AAAGTGGCATCACAGAGGCAATGTATCAGGAAATGGAACGGCTGATTGCTGATGCCAAAC 11741 | || |||||||| ||| | ||||| | | ||| | | |||||| | || ||| | Sbjct 605 ACAGCGGCATCACCGAGACCATGTACGACGCCATGAACCTGCTGATCGACGACGCCCGCC 546 Query 11742 CTGCAAGCCGCCACCTTATTGGCCTGAACATTACCCGGGA 11781 | | |||| ||||| | |||||| ||| | || ||| Sbjct 545 CGGTCGGCCGGCACCTGGTCGGCCTGGCCATCAGCCTGGA 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107213539065920