Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq149362 118 8e-22 seq161123 104 2e-17 seq122442 89.7 4e-13 seq16096 89.7 4e-13 seq135156 86.0 5e-12 >seq149362 Length=6446 Score = 118 bits (130), Expect = 8e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || ||||| || || ||||||||||| | ||| ||| ||| Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | || || ||||||| || ||||||||| | ||| || | Sbjct 2259 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 2317 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| || || ||||| ||||||| || ||| |||| || |||| Sbjct 2318 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 2377 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||| || |||| ||||| Sbjct 2378 ACATTCAGAAAGAGTCGACTCTGCATTTGGTG 2409 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||| Sbjct 1858 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGAC 1917 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||||| || || |||||| |||| | || |||| || |||| Sbjct 1918 TACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGGAA 1972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| |||| |||| | ||| | || ||| Sbjct 2086 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAAGACGGAAGAACTCTTGCAGAC 2145 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||||| ||||| |||||| |||| Sbjct 2146 TACAACATTCAAAAGGAATCTACCTTGCACTTGGT 2180 >seq161123 Length=4290 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 2779 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 2720 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 2719 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 2661 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||||| | ||| | |||||||||| Sbjct 2660 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCGGACTACA 2601 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 2600 ACATTCAAAAGGAATCAACATTGCACTTGGT 2570 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | |||||||| || || ||| |||| || ||| Sbjct 3234 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 3175 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| || || || || | ||| || || Sbjct 3174 -GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 3116 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||||| | |||| | || |||||||| Sbjct 3115 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 3056 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| ||||| || | ||| ||||| | ||| | || || || Sbjct 3055 CATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 3008 >seq122442 Length=1060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||||| ||||| || ||||||||| | || ||| ||| Sbjct 733 ATGCAGATTTTCGTGAAGACTTTGACAGGGAAGACCATTACCCTGGAGGTTGAGAGCTC- 675 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || ||||| ||||| ||||| | || |||||| Sbjct 674 CGATACAATCGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGATCA 615 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || || ||||||| | || || | ||||| ||||| Sbjct 614 GCAGAGGTTGATCTTCGCTGGAAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 555 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| ||||| ||||| Sbjct 554 TATCCAGAAGGAGTCTACCCTGCACTTGGTG 524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| || || | ||| ||||||||||||| | || | ||| ||||| ||| ||||| Sbjct 868 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 809 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || || |||| || ||||| || || |||||||| || | ||| ||||| | Sbjct 808 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 749 Query 107769 AGATTGCGAGGGG 107781 |||| |||||| Sbjct 748 CGATT--GAGGGG 738 >seq16096 Length=889 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || ||||||||||| || | ||| ||| ||| Sbjct 367 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 426 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| || ||| ||||| || || | ||| || || Sbjct 427 -GACACCATTGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCA 485 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||| ||||| ||||| | | ||| | || ||||| || Sbjct 486 GCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAA 545 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || ||||| ||||| Sbjct 546 TATTCAAAAGGAGTCCACTCTGCACTTGGTG 576 >seq135156 Length=1536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||| | | ||| | || || Sbjct 1210 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGAT 1151 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||||| || || |||||| |||| Sbjct 1150 TACAACATTCAAAAGGAATCAACATTGCACTTGGT 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397831501463536