Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq161123 96.9 5e-15 seq20564 95.1 2e-14 >seq161123 Length=4290 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| |||||| | || || ||| | Sbjct 2549 TGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTCAG 2490 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| || |||||||||||||| || || || | Sbjct 2489 ACACAATTGATAATGTCAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCAGC 2430 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||| || || | || ||| ||| || | ||||||| || | Sbjct 2429 AGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACAACA 2370 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 |||| || || || ||| | ||||| || Sbjct 2369 TACAGAAGGAGTCAACTCTGCATTTGGT 2342 >seq20564 Length=789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||| |||||||| || || ||||| || ||||| |||||||| ||||| || || || || Sbjct 648 TAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGA 589 Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 588 TGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTGAG 529 Query 146246 ATTAAGAGGAGG 146257 || || ||||| Sbjct 528 GTTGAGGGGAGG 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784053341950080