Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq17338 120 4e-22 seq169111 95.1 1e-14 seq130409 89.7 6e-13 >seq17338 Length=857 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| || || || || || || || ||| | || || || ||||||| Sbjct 451 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCCT 510 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 |||| || ||| | || ||| |||| || || || | ||||| || || || || |||| Sbjct 511 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 570 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||||||| || |||||||||||||| |||| | || ||| || | ||||| || | Sbjct 571 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTTG 630 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 | || || | || ||| || ||||||| | || ||||| || || Sbjct 631 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 679 >seq169111 Length=3694 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||| ||| ||||| | | |||||| |||||| | ||| | ||||| | ||||| Sbjct 551 AGAACGAAT--TTGACGCTCCAGATGATGCTTACATCTTGGATTCAGCTGAGAATGCAGG 608 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 |||| || ||||| || || | ||||| ||||| || |||||||| || || | || Sbjct 609 AGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGT 668 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAAT 138677 | ||| || || || |||||||| || ||||||||||| ||||||| Sbjct 669 AGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAAT 719 >seq130409 Length=1981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| || Sbjct 1325 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1384 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 ||||| || || | ||||| ||||| || |||||||| || || | || | ||| | Sbjct 1385 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCA 1444 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695 || || |||||||| || ||||||||||| |||||| || || ||| || | | | Sbjct 1445 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 1503 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726 ||| || || ||||||| | || || ||| Sbjct 1504 GACCTGTGTCTCATACCCATCTTCAGACTGT 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604039287699840