Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= NC_023734.1
Length=35725
Score E
Sequences producing significant alignments: (Bits) Value
seq114929 829 0.0
>seq114929
Length=4696
Score = 829 bits (918), Expect = 0.0
Identities = 1389/1998 (70%), Gaps = 33/1998 (2%)
Strand=Plus/Plus
Query 12296 ATGATTTGGCGGTCCATCGTTCCAGAGTTACTTGAGAATGAGTTGCTAAGAATTACAGAT 12355
||||| ||||| || || |||| ||||| | ||||| | | || | ||||| |||
Sbjct 367 ATGATGTGGCGCTCGGTCATTCCTGAGTTGTTAAAGAATAAAGTACTTCGTATTACTGAT 426
Query 12356 ATGCACAACGTCGAAGTGTTTTGTATGGCGTATGACACTTATCGCCAAAGCCAGAAAGAG 12415
||||| ||||| |||| || ||||| || || ||| | || | || |||||
Sbjct 427 ATGCATAACGTTGAAGGCTTCTGTATTGCTTACCACAACTGGCGTTCAGCTCAAAAAGAA 486
Query 12416 CTTGCGAAAGAAGGTGTTACCGTTATGGGTGCGTCAGGCAGCCCAATTAAAAATCCAGCA 12475
|||| | || | || | | || ||||||| ||||||||||| |||
Sbjct 487 GTTGCTATGTTTGGCATCACAATGAGAACTGATCAAGGCAGCATTATTAAAAATCCTGCA 546
Query 12476 TTGACCGCACTCAACGAGGCAGCAAGACAGATGGCAACTTTTGGTAGCTTACTAGGATTA 12535
|| || | || || || ||| ||| ||||||| |||||||| | | || ||
Sbjct 547 TTAACTGTGCTAAATGAAGCATCAAAACAGATGATTTCTTTTGGTTCAATGTTGGGTTTG 606
Query 12536 GATCCTTCATCTCGTCAACGCTTAACGGGTGCGGGTGATAAAAATCAAACCAACCCATTT 12595
||||| |||||||| || || || |||| || ||| || || || |||
Sbjct 607 GATCCGTCATCTCGCAGTCGTTTGACTGGTGGAAATGGCAAACCAAAAGATAATCCGTTT 666
Query 12596 GCAGGTGTTCTGAATATGTGATGAATGCTCAAGCGAGATAAATATGGTCGATTATCCCAA 12655
||| || |||||||||||| |||| | | ||| | || || ||
Sbjct 667 GCAAAGGTACTGAATATGTGA------------CGAGGCAGAAATGACAGCTTTCCCTAA 714
Query 12656 TGTTGATATCGCCAATAAGTGGGCAAGAGCAG-TCGTCAAAGGAAAAATACCAGCATGCA 12714
||||| || || || |||||||||| ||||| | || |||||||| || |||| |
Sbjct 715 CGTTGACATAGCAAACAAGTGGGCAA-AGCAGGTTGTTTCTGGAAAAATCCCGTCATGTA 773
Query 12715 AATGGGTGATTTTGGCTTGCCAACGTCACCTAGATGACTTAA---AAGCATCaaaaaaaC 12771
||||||||| | ||||| || || || || ||||||||| | || ||| |||
Sbjct 774 AATGGGTGAAACTAGCTTGTCAGCGCCATTTAAATGACTTAATTCACGCTAAAAAGAAA- 832
Query 12772 GTGACTATCCATACAAATTTGACCCAAAAGCTGCTGAAAAGAAGATACTTTTTGTTGAAT 12831
|| | ||| || |||||||| |||||| |||||||||||||| |||| | ||||
Sbjct 833 --GAATTTCCTTATAAATTTGAGCCAAAATTAGCTGAAAAGAAGATCGCTTTTATCGAAT 890
Query 12832 TGCTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATTCAGCTTGAACCTT 12891
|||| || |||||||| |||||||||||| | ||||| | ||||| ||| || ||||
Sbjct 891 TGCTACCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATGAAAATCTCGCTGGAGCCTT 950
Query 12892 GGCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAAGATGGCTTCCGCC 12951
||||||||||||| || || ||| || || |||||||| ||||| ||||| | || |
Sbjct 951 GGCAAAAATTTGGGATAGCTTGCACTTTTGGGTGGATGCGAAAAAAGGATGGTTATCGTC 1010
Query 12952 GCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCAGCAATTGCTGCCG 13011
|||| | ||| ||||||||||| || ||||| ||||| || ||||||||||| || |
Sbjct 1011 GCTTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGAATGGTAAATCAGCAATTGCGGCTG 1070
Query 13012 GCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAAGTTTATTCAGGCG 13071
| || || ||||| |||||||| |||||||| ||||||||| || || ||| |||| |
Sbjct 1071 GTGTTGCACTTAACATGTTTGCGAATGATGGCGAGTTTGGTTCAGAGGTCTATGCAGGTG 1130
Query 13072 CTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTGATGGTGTTACGAT 13131
| ||||| ||||| ||||| |||||||||||||| || || | || |||| ||||||
Sbjct 1131 CAACAACTGAGAAACAAGCTTGGGAGGTTTTTAAACCTGCTAGATTAATGGCCATACGAT 1190
Query 13132 CACCTGCCTTGGTATCAGCAACCGGCATACAGATTAACGCGGCCAGTCTCGAGCGCCCCG 13191
| |||| || | ||| | || || ||||| || | || || || || |
Sbjct 1191 CGCCTGAGTTTATTGAAGCTGCAGGTATTTTAATTAATGCAGGTAGCCTTGAAATACCAG 1250
Query 13192 ATGATGGTTCTTTGTTTGAACCCATTATTGGCAACCCGCCAGATGGTCAGTCACCACATT 13251
|||| ||||| | ||||| || || | |||| | || || |||||||||||||| || |
Sbjct 1251 ATGAAGGTTCCGTATTTGAGCCGATCACTGGCGATCCTCCTGATGGTCAGTCACCTCACT 1310
Query 13252 GCGCCATCGTTGATGAATATCATGAGCATGCTGATAGCAG-TCTCTATGACACGATGCAA 13310
| ||| | |||||||||| |||||||||| | || ||| || || ||||||||||||
Sbjct 1311 GTGCCGTGGTTGATGAATTTCATGAGCAT-CAGACTTCAGCACTATACGACACGATGCAA 1369
Query 13311 ACGGGTATGGGTGCGCGCCGCCAACCAATGATGTTTGTCATTACCACAGCCGGGCATAAT 13370
|| || |||||||| ||||| ||||| ||||| ||| ||| || || || || | ||
Sbjct 1370 ACAGGGATGGGTGCTCGCCGTCAACCGATGATATTTACCATCACAACTGCAGGTTTTGAT 1429
Query 13371 ATTGAAGGTCCTTGTTATGAGCTCCGTAGTCGCGTGCAAGATGTGCTATTGGGTAACGTA 13430
||||||||||| |||||||| || || || || |||||||| |||||||||||| ||
Sbjct 1430 ATTGAAGGTCCATGTTATGACCTTCGGAGCCGTGTGCAAGAAATGCTATTGGGTACAGTG 1489
Query 13431 CCTGATGACGAGTTGTTTGGTTGGATATGGACTATCGATGATGGTGATGATTGGGCAGAC 13490
|| ||||| ||| | ||||||||||||||||| || ||||| || ||||||||| | ||
Sbjct 1490 CCCGATGATGAGCTTTTTGGTTGGATATGGACCATTGATGACGGAGATGATTGGACTGAT 1549
Query 13491 CCAGACGTACTGATCAAAGCAAATCCCAATTACGATATATCTGTATACGCTGATTTCTTG 13550
||| | ||| || |||||||||||| ||||| | | ||||| || | ||| | |
Sbjct 1550 CCAAATGTATTGGCCAAAGCAAATCCTAATTATGGGGTTTCTGTTTATGGTGACTATCTA 1609
Query 13551 GAGTCACAACAAACCAAGGCGATTAATAACGCCAGTCGTCAAAACTCTTTTAAGACTAAG 13610
|| || || || | || ||| | || || | ||||| |||||||||||||
Sbjct 1610 GAATCTCAGCAGCGCCGAGCAATTCAGAATGCTTCTAAGCAAAATGCTTTTAAGACTAAA 1669
Query 13611 CATCTAAATGTTTGGGTATCTGCAAAATCAGCGTTCTTTAATATGGAGCACTGGAAAGCT 13670
|||||||| |||||||||||| | |||| | || ||||||||| | ||| | |
Sbjct 1670 CATCTAAACGTTTGGGTATCTTCTCGTACAGCATATTTCAATATGGAGAAATGGCAGGTA 1729
Query 13671 TGTGCTGATAACAGCCTAGATATTAATGACTTTGTAGCAACTCCTTGTGTGATGCCGATA 13730
||| | ||||| ||||| | | |||| ||| || | || ||| | ||||| ||
Sbjct 1730 TGTACGGATAAGAGCCTTAAATTCGATGATTTTTTAACTGTGCCATGTTTAATGCCTATC 1789
Query 13731 GATTTGGCATCCAAGATTGATTTAGCTGCACGTATCAACTTATTTTACCGTTACGAAGAC 13790
|| ||||| || ||| | ||| | ||| || ||||| | || ||| | |||
Sbjct 1790 GACTTGGCTTCAAAGGTAGATATTTGTGCCCGAATCAATCTGTTCTACAGAATTGAA--- 1846
Query 13791 GATGGACGATTGCATTATTACTGTATTTCGCCATGGTTTTACTTGCCTGAAGATACGGTT 13850
| ||| | | ||||| ||||| | || | |||||| | ||||||||||||||
Sbjct 1847 CAGGGAAAAATACATTACTACTGCGTGGATCCTCGCTTTTACCTACCTGAAGATACGGTA 1906
Query 13851 TATAAGGGCGATGAAAAACAAGCTATTGAGCGGTACCAGAAGTGGATGAACCAAGGTTTG 13910
|| |||||||||||||| | | || || || ||||| ||||||||| || |
Sbjct 1907 ATGAATGGCGATGAAAAACAGGTGGTCGATCGTTATCAGAAATGGATGAACATGGGAATT 1966
Query 13911 CTGGAAGTGCATGATGGTGCTGAGAACGACCTAAATGCTATTGCTGAAGACTTGGTGGCA 13970
|| ||||| ||||||||| |||| || || | | | | || || ||| |
Sbjct 1967 CTTGAAGTTCATGATGGTTCTGAAAATGATTTTACACTTGTGGCCAGTGATTTGATTAAT 2026
Query 13971 GATGCAAATAGATTTCCATTAACCGAAGTGCCTTATGATGAATGGGGCGGATTCCAAGTT 14030
||||| |||| | || |||| ||||| || |||||||||||||| || || || ||
Sbjct 2027 GATGCCAATAAGGTGCCTCTAACTGAAGTTCCATATGATGAATGGGGTGGTTTTCAGGTA 2086
Query 14031 GC---GGCTACTATCGAAGATGCTGGTTACGATGCTGTAAAGATACCTAAAACGGTTAAG 14087
|| | || || || || || || || || || || || || || || | || ||
Sbjct 2087 GCAAAAGATATTA-CG--GACGCCGGCTATGAGGCAGTGAAAATTCCAAAGAATGTCAAA 2143
Query 14088 TCTTTTTCTCCCGCTATGCGTGAGTTAGAGGCTGCAATGAAAAGCGGGCGATTTCATCAT 14147
| ||||| || || ||| ||| ||| ||||| || || ||||||||||||
Sbjct 2144 ACATTTTCACCTGCAATGAAAGAGCTAGTTGCTGCTATTTCTTCAGGTCGATTTCATCAT 2203
Query 14148 GACGGCCATCCGGTCTTATCTTGGATGATTGGTAATGTCGT-ATCACGCGAAGATGCAAA 14206
|| || |||| | ||||| ||||||||||| || ||| | | | || ||||| ||
Sbjct 2204 GATGGTAATCCAATTTTATCCTGGATGATTGGAAACGTCATAAGTAAGC-CTGATGCCAA 2262
Query 14207 CAACAACGTATTCCCGCGTAAAGAAACCAAATACaaaaaaaTTGATGGTGCTGTTGCCCT 14266
| || | || || |||||||| | | ||| || ||||||||||| || || ||
Sbjct 2263 TGAAAATGATTTTCCTCGTAAAGAGAAAAGTGCCAAGAAGATTGATGGTGCAGTCGCACT 2322
Query 14267 GCTTATGGGTATCAGTCG 14284
| |||||||| |||||
Sbjct 2323 ATTGATGGGTATTAGTCG 2340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113906804663456
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |