Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq206718 100 7e-16 seq2306 87.8 4e-12 >seq206718 Length=6464 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 4620 CATTTGAATGATGGAGACTTTGTCCTCTTCAATCGTCAACCCAGTCTCCATAAAATGTCT 4561 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| ||||| | || Sbjct 4560 ATTATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAATCTCTCTGTC 4501 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 4500 ACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 4441 >seq2306 Length=1941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390 |||| ||||| ||||||||| ||||| |||||| | ||| ||||| | ||| Sbjct 1628 TTCTTTTCAACAGGCAACCAAGCTTGCATCGTATGTCTGTCATGTGTCATAGGGC--AAG 1571 Query 305391 TATTAT-CTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| | | |||| || || | || |||| | || ||| | ||||||||||| Sbjct 1570 GATTATGCCGCATTGGAGGACGTTGAGGTTTAATGAATCTGTTTGCAACCCTTATAATGC 1511 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||| |||||||||||||| ||||| || ||| Sbjct 1510 TGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAA 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183543136670064