Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq7292 174 4e-39 >seq7292 Length=1256 Score = 174 bits (192), Expect = 4e-39 Identities = 378/555 (68%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 16129 GGCCGATCTGCGGGCCATCTTCGCCATGCGGCCGGAGGCCGCCATTGAGTACCTGGAGCG 16188 ||||||||| || ||||||| | || || | |||||||| | ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 16189 CAAGGGATTCGCCATTACCTGGAACTGGCACGA--TGTT-GACGCGGCCACCCATGCCCG 16245 ||| || | || |||||||| | ||||| || || | || |||||| || | || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCC---CACGACCA 418 Query 16246 AGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACGTGCTCCAGGACATCCGCGACGCCCT 16305 |||| | || || |||||||| |||||||| ||||| |||||||||||| | | Sbjct 419 AGCGTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATT 478 Query 16306 GGTCGATAACCTGGAGCGTGGCGGAACGCTGCGCGACTTC-CAGCGCAACCTGCGGCCGA 16364 || |||| || ||| || |||| | ||| | | ||| ||| ||| Sbjct 479 GGAGAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCACCAAGGAAC-TGCAGCCTG 537 Query 16365 TCCTGGAGGCCAAGGGCTGGTGGGGGCGTCAGATAGTGGTTGC--GCCGGACGGCGGGGC 16422 |||||||| | || |||||||| ||| | |||| | ||| | ||| || Sbjct 538 TCCTGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAG--GGCAATGC 595 Query 16423 CGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAAACGATCTACCAGACCAACGTGCA 16482 ||| | | |||||| || ||||| |||||||| | |||||||||||||||||| |||| Sbjct 596 GGAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCA 655 Query 16483 GTCGGCCTACATGGCCGGGCGCTATGCCGCCGCATACGAGGCCAGG---GAAACTCACCC 16539 | ||||| |||||||| ||| | |||| ||| |||| || | || || || || Sbjct 656 GAGCGCCTATATGGCCGGTCGCAAATCCGC--CAT-GGAGGACACGGTCGAGACCCATCC 712 Query 16540 TTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCCGGCCCAGCCATGCGGCGCTACA 16599 ||||||| || | || || ||||| || ||||| || |||||||| ||||| | Sbjct 713 GTACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAA 772 Query 16600 TGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCAGCACATCATGCCGCCGAATGGCTA 16659 || ||||| ||| ||||||||||||||| |||| | ||||| || || | Sbjct 773 CGGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTT 832 Query 16660 CAACTGCCGGTGCCG 16674 |||||||| ||||| Sbjct 833 TAACTGCCGCTGCCG 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117459310438400