Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq115971 369 9e-98 seq132854 159 9e-35 seq25629 136 1e-27 seq6532 123 6e-24 seq45878 80.6 7e-11 >seq115971 Length=1990 Score = 369 bits (408), Expect = 9e-98 Identities = 1129/1713 (66%), Gaps = 58/1713 (3%) Strand=Plus/Minus Query 19832 CCATCGACCTGTCACAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGACTACGAAGCCA 19891 ||||||||||| ||||| ||||||||| ||||||||| | || |||| |||| | Sbjct 1861 CCATCGACCTGAGTCAGCTACCGGCGCCGAGCGTGGTCGAGCCACTGGACTTCGAAAGCC 1802 Query 19892 TCCTGGCCGAGCGGAAAGACTACTTTGTGTCGCTGTATCCCGCCGACCAGCGGGACGCCG 19951 | ||| | ||| || || ||| ||| || | ||||| | | ||| || | || Sbjct 1801 TGCTGCAGGCGCGCAAGGAGCGCTTGGTGAGCCTCTGGCCCGCGGCCGAGCAGGCCACCC 1742 Query 19952 TGCGCGCCACGCTGGAGCTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCT 20011 |||| ||| |||| |||||||||||||||| | |||||| | | |||| ||| ||| Sbjct 1741 TGCGTGCCCGCCTGGCGCTGGAATCCGAGCCGCTGACCAAGTTGCTCGAGGAAAACACCT 1682 Query 20012 ACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGCGGGGTCATGCTGGCCT 20071 | ||||| || ||| |||||||||||| ||||| || || | || |||||||||| Sbjct 1681 ATCGCGAATTGCTGTTGCGCCAGCGCGTCAACGAGGCAGCCCAGGGCACCATGCTGGCCA 1622 Query 20072 TCGCCGAAGGGGAAGACCTGGAGCAGATCGCGGCGAACTTCAACGTGCAGCGCTTGACCA 20131 ||| || |||||||| |||||||| ||| | ||||| || ||| || Sbjct 1621 AGGCCCGTGGCAGTGACCTGGAACAGATCGCCGCGGGCGTCAACCTGACACGCCTGGTGG 1562 Query 20132 TCACGCCGGCTGACGACACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGACT 20191 |||| || || | || | |||| ||||| || |||||||| |||| |||||| Sbjct 1561 TCACCCCCGCCCCCCCCAGCGCCGTACCGCCTACCGCCGCCGTGCTGGAAACGGACGACG 1502 Query 20192 CGCTGCGCGAGCGCGCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAGG 20251 | ||||||||||| | ||| || | || || || ||||||||| ||| ||| | Sbjct 1501 CCCTGCGCGAGCGGGTGCAGATGGCCTGGGAGGGCCTCAGCGTGGCCGGACCGCGCAACG 1442 Query 20252 CCTACGAGCAGTTCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGCC 20311 ||||| | | |||||| || ||| | |||||| ||||| |||| | ||||| Sbjct 1441 CCTACATCCTGCATGCGCGCAACGCCAGCGGTCAGGTGGCCGACGCCAGCGCCACCAGCC 1382 Query 20312 CGGCCGGCGCGGAAGTGGTG---GTCTCGGTGCTGTCGCACCTGAACG--ACGGCA-CGG 20365 | | || | | |||||| ||| | |||| | || | ||| | |||||| || Sbjct 1381 C---CAGCCCCGCCGTGGTGACCGTCACCGTGCAGA-GC-CTGGAAGGGGACGGCAGCGC 1327 Query 20366 CAGACGAGAGCCTGCTGGCGACTGTACGCACCGCGTTGAGCGATGACGATACCCGGCCGC 20425 | | ||| ||||||| || || || || | | || || || || ||| Sbjct 1326 CTCCCCCGAGT-TGCTGGCCACCGTCAGCCAGGCCCTCAATGACGAAGACGTGCGCCCGG 1268 Query 20426 TCGGCGACCGTCTGACGGTGCAATCCGCCACCATCGTCCCGTACCGCATCCGTGCCACGC 20485 | || || || |||| ||||| ||||| ||| || | |||| || ||| || Sbjct 1267 TAGGTGATCGCCTGATCGTGCAGTCCGCGCAGATCCTCACCTACCAGGTCAAGGCCGTGC 1208 Query 20486 TGTACCTGGC----ATCGGGGCCGGCGGCCGAGCCGATCCTGGACGCGGCTGGCAAGCGG 20541 || |||||| | ||| |||| ||| ||| ||||||| | | || | ||| | Sbjct 1207 TGCACCTGGTCAATACCGGTGCCGAGGGC-GAGGTTATCCTGGCCACCGCCCGGCAGCAG 1149 Query 20542 GCTGACACTTACCGCACCACGCGCCGGCGCATCGGCC-GCGACATCAACCGCTCGGCGAT 20600 | ||| ||| || | |||||| ||| ||||| |||| | ||||| | || Sbjct 1148 TTGGCCACCTACGTCAACCAGCGCCGCCGCCTCGGCGTGCGAG-TGTCGCGCTCCGGCAT 1090 Query 20601 CACGGCGGCACTACATGTGGAGGGCGTGGAAAAGCTGGTGCTGCATGAACCGGCCGAAGA 20660 | || || || || || | ||||||| | | | ||| || | || ||| | || Sbjct 1089 CGATGCCGCCCTGCACGTCGCCGGCGTGGCCTGGGTCGAGCT-CAAGGACTGGCAG--GA 1033 Query 20661 CATCGCGCTCGATCTGA-CACAGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGG 20719 | | | | ||| | | | ||||||| ||| ||||||| | | ||| | | || Sbjct 1032 CCTGACCC-CGAGCGAAGCCCAGGCGGCCTATTGCACCGCCAGC---AGCGTTACCTTGG 977 Query 20720 GCACCAGTGAGTAGCGCAACCCTGTTgccgccgaacgcgacgccgctggagcgccgcgcc 20779 || | ||| | ||| || ||||||| ||| || ||||| || | |||| Sbjct 976 GCGTC--TGACCATGAACACCTTGCTGCCGCCCAACAGCACCTACCTGGAACGGCTCGCC 919 Query 20780 gcgcagacgggcgcacgcatcgaacgcgTGCCGGTGCCGCTGCGCGACCTGTGGAACCCA 20839 || || | || |||||| ||||| || || |||||||||||| | || Sbjct 918 GCCGAGGCCCTGGCCGGCATCGGCGAGGTGCCCGTCCCACTGCGCGACCTGGCCGATCCC 859 Query 20840 GCCACCTGTCCGGCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGG 20899 | | || |||| | ||| |||||| |||||||||| || || ||||| |||||| Sbjct 858 GACCGTTGCCCGGAGGCACTGCTGCCCTACCTGGCCTGGGCGCGCTCGGTGGATCGCTGG 799 Query 20900 AACCCTTCCTGGCCGCTCGCCACCAAGCGCGCCGTGACG--GCCGCCTCCTACTTCGTGC 20957 || |||| | ||||||||||| |||| | || | | ||||||| | Sbjct 798 GACAGCGACTGGAGCGACACCACCAAGCGCCAGGTGATCAAGTCGGCGC--ACTTCGTCC 741 Query 20958 ACCGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTACCTGA 21017 || | | |||||||| |||||||| || ||||| | |||||| || ||||||||||||| Sbjct 740 ACGCCCACAAGGGCACCATCGGCGCCCTGCGCCGGGTGGTGGAACCCCTGGGCTACCTGA 681 Query 21018 TTCGCGTCATCGAGTGGTGGCAGACCAACCCGCCCGGGCCGCGCGGGTCGTTCCGGCTCG 21077 | |||||| ||||||||||||| | |||| |||| | | || | ||||| || | Sbjct 680 TCCGCGTCCACGAGTGGTGGCAGGAGAGCCCGACCGGCACTCCGGGCACCTTCCGCCTGG 621 Query 21078 ATGTGGGCGTGCTGCAAACCGGCATCGACGAGGCCATGTATGCCGAGCTGGAACGCCTCA 21137 | || |||||||| | | ||||||| |||| ||||||| | || || | | || | Sbjct 620 ACGTCGGCGTGCTCGACAGCGGCATCACCGAGACCATGTACGACGCCATGAACCTGCTGA 561 Query 21138 TTGACGACGCCAAGCCGTGTTCCCGGCCGATGCTCGGCCTGCAAATCAGCCTGGAGGTGC 21197 | ||||||||| ||| ||||| || |||||||| |||||||||||| | Sbjct 560 TCGACGACGCCCGCCCGGTCGGCCGGCACCTGGTCGGCCTGGCCATCAGCCTGGAGACCC 501 Query 21198 GTGGCACC--CAGGCCACCAGCGCCGCCGCCTATCTGGGCGACGTGTTGACCGTCTACCC 21255 |||| || || || || | | | |||| | |||||| ||||||||||| | Sbjct 500 GTGGTGCCGTCA-GCGTTGGGCTCTG-CACCTACCAGGGCGAAACCCTGACCGTCTACGC 443 Query 21256 CTACGAGCCACCCGA---CATCGTCGTGAGCGGC--ACCGCGGCT--GTCTCGGCCGCTT 21308 |||| | |||||| ||||||||| |||||| | | ||| | |||| || Sbjct 442 CTAC---CAACCCGAAGCCATCGTCGTCAGCGGCCAGGCCCTGCTCGGCGCCGGCAGC-A 387 Query 21309 CCCACGCCATCGATACCCTGACCGTCACTCAATAACACCATGCCACAGACCTTCTTCATC 21368 ||||| | |||| ||||||| | || || ||||| ||||||| || | Sbjct 386 CCCACATCCTCGACACCCTGAGCATC------TA--TCCATGAGCCAGACCTACTACGCT 335 Query 21369 GTGCCGACCGCCGCCGGCGAGGCCAAGGATGCCAACGCCAAGGCGCTTGGC-CAGGCGCG 21427 | | || ||| ||||||||||||| ||||||||| ||||| | | | | Sbjct 334 ATCCTCACGGCCATCGGCGAGGCCAAGCTGGCCAACGCCGCCGCGCTCAACACCACCTTG 275 Query 21428 CAAGTACACCCACATCGCCGTGGGCGACGGCGGCGGCGTGCTGCCCACGCCCGACCGCGC 21487 || | | || | || || || ||||| ||||| |||| | ||||||||||| ||| | Sbjct 274 AAAAT-CGCCAAGATGGCGGTCGGCGATGGCGGTGGCGCGGTGCCCACGCCCACGCGCAC 216 Query 21488 CCGCGCCGCCCTGGTCAACGAGTGCTACCGCGC 21520 || | ||||||| | |||||| |||||||| Sbjct 215 CCAGACGGCCCTGGCCGGCGAGTGGTACCGCGC 183 >seq132854 Length=843 Score = 159 bits (176), Expect = 9e-35 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 22554 ATCGGGTATTTCGCGCGCTCCACCGCCCCGAACGGATGGCTCAAGGCCAACGGCGCGGCG 22613 |||| || ||||| ||| ||||||| ||||| || | ||||| |||||||| || || Sbjct 231 ATCGAATACTTCGCCCGCACCACCGCTCCGAATGGCTATCTCAAAGCCAACGGTGCCGCC 172 Query 22614 GTCAGTCGTACGACCTACGCGGCGCTGTATGCCGAGATTGGCACCACGTTCGGCGCCGGC 22673 ||||| || || ||||| ||| |||| | |||| || || ||||| ||||| |||||| Sbjct 171 GTCAGCCGCACTACCTATGCGACGCTATTCGCCGCCATCGGTACCACCTTCGGGGCCGGC 112 Query 22674 GATGGCGCCGCCACGTTCAACCTGCCCGATCTGCGCGGCGAATTCCTGCGCGGCTGGGAT 22733 || || || |||| ||||| ||||||||||||||||| || ||| | |||||||||||| Sbjct 111 GACGGTTCCACCACCTTCAATCTGCCCGATCTGCGCGGTGAGTTCATCCGCGGCTGGGAT 52 Query 22734 GAC 22736 ||| Sbjct 51 GAC 49 >seq25629 Length=702 Score = 136 bits (150), Expect = 1e-27 Identities = 370/546 (68%), Gaps = 34/546 (6%) Strand=Plus/Plus Query 15053 TGCCCCTGGCGGCGGTGCGCGCGGTCAACGAGGTTGAGAGCCGGGGGAGCGGGTTCCTGC 15112 |||||||||| || || | ||||||| |||||| || ||| || ||||| ||||| Sbjct 2 TGCCCCTGGCCGCTGTCCAGGCGGTCACCGAGGTCGAATCCCGCGGCAGCGGCTTCCTCG 61 Query 15113 CGGACGGACGGCCCGTGATCCTGTTCGAGCGGCACGTCATGTAC---CGGCAGCTG---C 15166 ||||| || || |||||||| ||||| || || ||| | ||| || | | || | Sbjct 62 ACGACGGCCGCCCGGTGATCCTCTTCGAACGCCATGTCTTCTACGCCCGCCTGGTGGAAC 121 Query 15167 G-CGAGGCCGA-CCAGGATGCGGATGCGCTCGCGGCCCGG--TATCCCAACATCGTCAAC 15222 | || ||||| ||| | || || ||| || || || ||||||| | | ||||| Sbjct 122 GTCGCGGCCGCGCCACG--GCCGAGCTGCTGGC--CCAGGACTATCCCACCCTGGTCAAT 177 Query 15223 CCGAGCCGTGGCGGTTACGTGGGCAAGGCCGGGGAGCACATG----CGGCTCGCTCATGC 15278 ||| | || || |||| | || | || ||| ||| |||||| | | || Sbjct 178 CCGCAACCCGGTGGCTACG---GTAACGGCGCC-AGCGAATGGCAACGGCTCACCCTGGC 233 Query 15279 CATCGCCA--TCGACCGCGAT--TGCGCCCTTGCGTCGGCGAGCTGGGGGCTGTTTCAAG 15334 | ||||| ||||| | || || ||||| | |||||| |||||||| ||||| || Sbjct 234 C--CGCCAGCTCGAC-GAGAACCTG-GCCCTGGAGTCGGCCAGCTGGGGCCTGTTCCAGA 289 Query 15335 TCATGGGATACCACTGGGAGCGGTTGGGGTAT-CCGAGCGTGCAGGCATTCGCGGACGCC 15393 ||||||| ||||||||| || ||| || |||| | |||| |||| | | Sbjct 290 TCATGGGCTACCACTGGCAGACCCTGGACTACGCCGATA-TCCAGGACTTCGTTGCCCGG 348 Query 15394 ATGCAAAGCGGCGAGGGAGCGCAGCTCGACGCCTTCGTGCGGTTCGTCACCAGTGACCCC 15453 ||| ||||||| || ||||| || || ||||||||||| ||| | | | ||| Sbjct 349 ATGACGAGCGGCGCGGCCGCGCACCTGGAGGCCTTCGTGCGCTTCCTGCACGCCCAACCC 408 Query 15454 GCCTTGCACAAGGCGCTCACGGGCGGG-AAGTGGTCCGCCTTCGCCGCGCTCTACAACGG 15512 || ||| || || || || || || ||| | | ||||||| ||||||||| Sbjct 409 GCGCTGCTGCAGAGCCTG-CGCGCAGGCAAATGGGCGGACTTCGCCCGTGGCTACAACGG 467 Query 15513 GCCAGCCTACAAGGACAACCTGTATGACGTGAAGCTGGCGCGCGCCTTCGCACGCTACCA 15572 ||| | |||| ||| || || ||| | |||||||||||||||||||| |||||||| Sbjct 468 GCCCGGCTACGCCCGCAATCTCTACGACATCAAGCTGGCGCGCGCCTTCGCCCGCTACCA 527 Query 15573 GGCCGA 15578 ||| || Sbjct 528 GGCGGA 533 >seq6532 Length=1314 Score = 123 bits (136), Expect = 6e-24 Identities = 278/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 28403 CTGGGCCGGGTGCTGCTGATGAACCCGATTGGCCTCCTGGTGACGGCAATTGCGGTCGCG 28462 || ||||||| ||||||||||||||| || ||||| |||| || | || ||| | Sbjct 816 CTCGGCCGGGCGCTGCTGATGAACCCCATCGGCCTGTTGGTCACTGGCATCGCGCTGAGT 875 Query 28463 GCCTACCTGATCTACCGGTACTGGTCTCCGATCAGCGAGTTCTTCTCGGGGCTGTGGCAG 28522 || |||||||||||||| |||||| || |||| | |||||| ||||| ||| || Sbjct 876 GCATACCTGATCTACCGCTACTGGGAGCCTATCAAGGGCTTCTTCGGTGGGCTCTGG-AG 934 Query 28523 C-AGGTGAAGACGGCGTTCGACGGCGGCATCGCTGGCGTGTCCGCGCTGATCCTGAACTG 28581 | || | || | ||| |||| ||| | || || | ||||||||||| |||| Sbjct 935 CGAGATCAAATCTAGTTTCAACGGAGGCCTGGCAGGGATTGGGGCGCTGATCCTCAACTT 994 Query 28582 GTCGCCGGCTGGCCTGTTCTACGCCGCACTCGCGCCGGTGTTGCAGTGGTTCGGGTTCGA 28641 || | |||||||||||| ||| |||| ||| || | ||||| | || Sbjct 995 CAGCCCCGTGGGCCTGTTCTACCGGGCATTCGCTGGTGTGATGAGCTACTTCGGCGTTGA 1054 Query 28642 CGTGCCGGCCAAGTTCACCGAGTTCGGCGCCAACATCGTGCAG-GGCCTGGCCAACGGCA 28700 |||| | ||| ||||| |||||||||| || ||| | ||| ||||||| || || | Sbjct 1055 GTTGCCAGGCAAATTCACAGAGTTCGGCGGCATGATCAT-CAGCGGCCTGGTCACTGGTA 1113 Query 28701 TCCGCAGCGCCATCGGCTGGGTCACGGATGCGGTGGGCAGCGTGGCAAGCGGTGCGATCA 28760 || ||| |||| | || || || ||| |||||| |||| | | | || | Sbjct 1114 TCGGCAACGCCTTGACCTCGGCCAAGGAGTCGGTGGTTGGCGTTG---GTACATCTATTA 1170 Query 28761 CGGCC----TTCAAGAGCCTGCTGGGCATCCACTCGCCCAGCCGCGTGTT 28806 || | || ||| | ||| |||||||| ||||||||||| ||||| Sbjct 1171 AGGGCTGGTTTACCGAGAC-GCTCGGCATCCAATCGCCCAGCCGGGTGTT 1219 >seq45878 Length=508 Score = 80.6 bits (88), Expect = 7e-11 Identities = 133/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 27777 TGGACCCAGGCGCGCTGAAGGGGGCGGACCTGTTCCGTCAGAACCAATTCGCGTGGCTGG 27836 ||||| | |||||||| ||||| ||||||||| ||| |||| ||| |||||| Sbjct 305 TGGACGCCGGCGCGCTCAAGGGCAGCGACCTGTTCGCCCAGGACCAGGCCGCCTGGCTGC 246 Query 27837 AGAAGGTGCTGCTGCCGACGCTGGCCGCCAAGGGCATCACC---GACCGCAAGCAGGTCG 27893 | |||| |||||||| |||| ||||||||||||| | |||||| |||||| Sbjct 245 AACAGGTCCTGCTGCCAGCGCTCAAGGCCAAGGGCATCAGCGGTGACCGC---CAGGTCC 189 Query 27894 AGGACGCCATCGGCAGCATCTTCTCCAACCGCACGGCGGCGGGCCTCTTCGCGCAGATGT 27953 ||| || || ||| |||| | |||| | | | || | |||||| | ||| | | Sbjct 188 TCGACACCCTCCGCACCATCCTGCCCAATCAAGCCGGTGCCGAACTCTTCACCCAGTTCT 129 Query 27954 ACCTGCAGCGC 27964 | | ||||||| Sbjct 128 ATCAGCAGCGC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127558257672832