Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq16096 102 5e-17 seq161123 100 2e-16 seq149362 95.1 8e-15 seq25063 95.1 8e-15 seq117806 91.5 1e-13 >seq16096 Length=889 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || |||||| ||| ||||| || || || || | Sbjct 594 ACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGC 535 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | |||||| ||| | || Sbjct 534 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 475 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || |||||| |||| |||| || | |||||| ||| || Sbjct 474 AATACCCTCCTTATCCTGAATTTTAGCTTTC-ACATTATCAATGGTGTCAGAGCT---TT 419 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| ||||| || || | || || |||||||| ||||| Sbjct 418 CCACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 367 >seq161123 Length=4290 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| ||| || |||||||||||||| | Sbjct 2324 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 2383 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || ||||| ||||| || | | |||||| ||| | || Sbjct 2384 AGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 2443 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||||||| | | |||| || | ||||| ||| ||| Sbjct 2444 ATGCCTTCTTTGTCCTGAATTTTC-GCCTTGACATTATCAATTGTGTCTGAGCT---TTC 2499 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| ||||| || || || |||||||| ||||| Sbjct 2500 CACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 2780 CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCG 2839 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| |||||||| || | | |||||||||| | || Sbjct 2840 AGCGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2899 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||| || || | |||| || | ||||| ||| || Sbjct 2900 ATGCCCTCCTTGTCCTGAATCTT-TGCCTTGACATTATCGATTGTGTCAGAGCTC---TC 2955 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || ||||| | || || |||||||||||||| Sbjct 2956 AACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 3006 >seq149362 Length=6446 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || | || || ||||| |||||||| || | Sbjct 2198 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 2139 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| ||||| ||||| || ||||| || | | |||||||||| | || Sbjct 2138 AGAGTTCTTCCGTCTTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2079 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATTC 33698 | ||| || ||||| ||||| || | |||| |||| || || |||| || Sbjct 2078 ATACCCTCCTTGTCCTGGATTTT-TGCCTTGACATTGTCAATTGTATCAGAGCTT---TC 2023 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || || ||||| | ||| ||||||||||||||||| Sbjct 2022 CACCTCCAAGGTGATTGTCTTCCCTGTAAGCGTCTTTACAAAGATCTGCAT 1972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| |||||| || ||||||||||| | Sbjct 2426 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 2367 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| || | || ||||| |||||||| | | |||||| ||| | || Sbjct 2366 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 2307 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| || || | || | || | ||||| ||| ||| Sbjct 2306 ATGCCTTCTTTGTCCTGAATCTT-TGCCTTGACGTTATCAATTGTGTCTGAGCT---TTC 2251 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| || || || || || ||||| || ||||| Sbjct 2250 CACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| || | || || | | |||| ||||| ||||| || ||||| Sbjct 1934 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 1875 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | |||||||||| | || | ||| || ||||| || ||| || | ||| Sbjct 1874 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CATT 1816 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| || ||| |||||| || | ||||| || || || || | ||| ||||| Sbjct 1815 GTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTAC 1756 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 1755 AAAGATCTGCAT 1744 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| |||||| ||||||||| |||||||| || | |||||| || | || || Sbjct 1496 ACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCATCCTCA 1437 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| | || || || | || | || || ||||| Sbjct 1436 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 1377 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || || || |||| |||| ||||| |||| || || || | ||||| || Sbjct 1376 ATCTT-TGCTTTGACATTGTCAATAGTGTCAGAGCTT---TCAACCTCGAGGGTGATGGT 1321 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | ||||| |||||||||||||| Sbjct 1320 CTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 >seq25063 Length=710 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| || || || ||||||||||| | Sbjct 369 ACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGC 428 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || ||||||||||| |||| ||||||||| || | || Sbjct 429 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 488 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || || ||||| ||| || | | |||| ||| | |||||| ||| | Sbjct 489 AATTCCCTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATGGTGTCAGAGCT---CT 544 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| || || || || || || || || |||||||||||| Sbjct 545 CGACCTCAAGGGTGATGGTCTTTCCCGTCAAGGTCTTGACGAAGATCTGCATA 597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| || || || |||||||| || | Sbjct 141 ACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGC 200 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || ||||||||||| || | | |||||| ||| | || Sbjct 201 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 260 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| || || ||| |||| ||| | |||||| ||| | Sbjct 261 GATACCCTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCAATGGTGTCTGAGCT---CT 316 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| || || || || || || || ||||||||||||||| Sbjct 317 CCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATA 369 >seq117806 Length=5035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 3667 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGC 3608 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || |||| | ||||| ||||| || || Sbjct 3607 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTG 3548 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| | ||||||| || ||||| || | ||||| || || || || Sbjct 3547 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGT 3489 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTG 33754 || ||||| || ||||||||||| |||| Sbjct 3488 TAGGGTTTTCACGAAGATCTGCATGGTTG 3460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327842596654080