Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq169111 100 3e-16 seq130409 100 3e-16 seq17338 95.1 1e-14 >seq169111 Length=3694 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 580 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 639 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | |||||||||| ||||||||||| ||| Sbjct 640 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 699 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATT-CCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || | |||| |||||| | ||||| | Sbjct 700 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 758 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 || |||||||| || ||| Sbjct 759 CTCAGACTGTGTGATCCACACT 780 >seq130409 Length=1981 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 1346 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 1405 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | ||||| |||| ||||||||||| ||| Sbjct 1406 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 1465 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 1466 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 1524 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 1525 TTCAGACTGTGTGATCCACACT 1546 >seq17338 Length=857 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || ||||| || | || | || || ||||| || ||| Sbjct 462 TACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGT 521 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 522 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 581 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || |||||||| |||||| Sbjct 582 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTTGCCTATCCT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558000165148800