Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq105402 104 3e-17 seq143833 87.8 2e-12 seq4302 84.2 3e-11 >seq105402 Length=314 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || ||||| || ||||| ||| | |||||||||||| ||||||||| || | || ||| Sbjct 1 ATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGA 60 Query 69856 ATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC 69915 || || || || | ||| ||||| || || ||| ||| | |||||| ||| Sbjct 61 ATGTTGTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTC 120 Query 69916 AATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| || || |||||||||||| ||||| | ||| || |||||| Sbjct 121 AAGGTATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 177 >seq143833 Length=506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | |||| | |||| |||||| ||||| || || Sbjct 390 TCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCC 449 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 ||| ||| | |||||||||||| ||||||||| || | || ||||| || Sbjct 450 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 500 >seq4302 Length=1545 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||| ||||||| || || ||||| || || || || Sbjct 1344 GCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 1403 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| | || |||||||| ||||||||||| || ||| ||| ||| || |||| Sbjct 1404 ACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGA 1462 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 1463 AGATCCCCTCCAC 1475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685062526527360