Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq114929 170 5e-38 >seq114929 Length=4696 Score = 170 bits (188), Expect = 5e-38 Identities = 540/834 (65%), Gaps = 6/834 (1%) Strand=Plus/Plus Query 746 CCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTGGAACCGTGGCAG 805 || || |||||||| ||||||||| | ||| | ||| ||| | ||||| || ||||| Sbjct 896 CCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATGAAAATCTCGCTGGAGCCTTGGCAA 955 Query 806 CTCTTTGTGATCTGCTGTGCGTTTGGCTGGGTC--AATAAAGGCTCCCGGCTG-CGCCGC 862 |||| ||| || | ||||| ||| | || ||||| | || | || ||| Sbjct 956 AAATTTGGGATAGCTTGCACTTTTGGGTGGATGCGAAAAAAGGAT---GGTTATCGTCGC 1012 Query 863 TTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGT 922 ||||| ||| ||| ||| | || |||||||| || ||||| ||||| | || ||| Sbjct 1013 TTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGAATGGTAAATCAGCAATTGCGGCTGGT 1072 Query 923 GTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCC 982 ||||| || | ||||| |||| ||||||||| | || || ||| | ||||| Sbjct 1073 GTTGCACTTAACATGTTTGCGAATGATGGCGAGTTTGGTTCAGAGGTCTATGCAGGTGCA 1132 Query 983 ACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACA 1042 || || |||||||| || ||||| || ||| || || || | ||| | ||| | Sbjct 1133 ACAACTGAGAAACAAGCTTGGGAGGTTTTTAAACCTGCTAGATTAATGGCCATACGATCG 1192 Query 1043 CCCATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCGGAG 1102 || | | | ||||| || ||| |||| || | | | | || || Sbjct 1193 CCTGAGTTTATTGAAGCTGCAGGTATTTTAATTAATGCAGGTAGCCTTGAAATACCAGAT 1252 Query 1103 GATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCCACTGT 1162 || || | ||||| ||| | | || | || ||||||| ||||| |||||| Sbjct 1253 GAAGGTTCCGTATTTGAGCCGATCACTGGCGATCCTCCTGATGGTCAGTCACCTCACTGT 1312 Query 1163 GCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGCTTTATACCACGATGCTTACC 1222 |||||||| ||||||| ||| ||||| || || || || |||||||| || Sbjct 1313 GCCGTGGTTGATGAATTTCATGAGCATCAGACTTCAGCACTATACGACACGATGCAAACA 1372 Query 1223 GGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATT 1282 |||||||| || || ||||| || |||| | ||||||| || || || | | ||| Sbjct 1373 GGGATGGGTGCTCGCCGTCAACCGATGATATTTACCATCACAACTGCAGGTTTTGATATT 1432 Query 1283 GAGGGGCCGTGCTACGACAAGCGGCGGGGAGGTATCGAGATGCTCAACGGTTCGGTACCC 1342 || || || || || ||| ||| | | | || ||||| ||| | || ||| Sbjct 1433 GAAGGTCCATGTTATGACCTTCGGAGCCGTGTGCAAGAAATGCTATTGGGTACAGTGCCC 1492 Query 1343 AACGATGAACTGTTCGGGATCATCTATACCGTTGACGAAGGCGATGACTGGACCGACCCG 1402 | ||||| || || || || | ||| |||| || || ||||| ||||| || || Sbjct 1493 GATGATGAGCTTTTTGGTTGGATATGGACCATTGATGACGGAGATGATTGGACTGATCCA 1552 Query 1403 CAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTA 1462 | || ||| ||||| ||||| ||| ||| || || |||||| | || | | | | Sbjct 1553 AATGTATTGGCCAAAGCAAATCCTAATTATGGGGTTTCTGTTTATGGTGACTATCTAGAA 1612 Query 1463 AGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACAC 1522 |||||||| || || | | || || | | ||| | ||||| || ||||| Sbjct 1613 TCTCAGCAGCGCCGAGCAATTCAGAATGCTTCTAAGCAAAATGCTTTTAAGACTAAACAT 1672 Query 1523 CTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGCAG 1576 || || | ||||| || | ||| | || |||||||| ||| || |||||| Sbjct 1673 CTAAACGTTTGGGTATCTTCTCGTACAGCATATTTCAATATGGAGAAATGGCAG 1726 Score = 152 bits (168), Expect = 1e-32 Identities = 498/765 (65%), Gaps = 44/765 (6%) Strand=Plus/Plus Query 3349 TCAACAATATCGAAGAACTGGGGCTCGGATTTATCAACTATTCACTGGTGCCGTATCTGA 3408 |||||||||| || | ||||| | |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 3409 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTA 3466 | || || || ||| ||||| || ||| | | | | | | ||| | | Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAAT--A 3425 Query 3467 TTACGCCAAATTTAACGCCGGGGCGTTACTGCGCGGGGATATGAAGTCCCGTTTTGAAGC 3526 ||| || || ||||| || || || | | || || ||| |||| || |||| |||| | Sbjct 3426 TTATGCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 3527 CTACGCCACCGGGATTAACTGGGGAATTTACTC--TCCCAATGACTGCCGCGACCTGGAA 3584 || | || || || | ||||| ||| ||| ||| ||||| || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 3585 GATATGAATCCGCGTCCCGGTGGGAATGTCTATCTCACACCGATGAACATGACCACGAAA 3644 |||||| |||| ||| |||||| |||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 3645 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 3704 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 3705 TCTTGATGTACCGCTGAGTCTGAAATCTGTCAGTGACTCCGGTGAGTTTGAAGGGTATGG 3764 | | |||| ||||| | | ||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 3765 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 3822 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 3823 GCTTCCCTGCGGGCGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 3881 || || || ||| | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 3882 CATGGATGAACCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 3941 |||| || || || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 3942 CAGGGGACGGTTGCTTATTGATGATGATCCCCTCGCAAAACGCGCACATGCACACATGAA 4001 | || || || ||||||||||||||||| | || ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 4002 GGCCGGTTCGTTAACCGGCCTTTCTATTGGGTACGTCCTGAAAGACTGGGAATACGACCG 4061 || || | | || | || ||||| ||| | || ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 4062 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGT 4106 |||| || || | || |||||||| || || |||||||| Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGT 4035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122409837353888