Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq149362 93.3 4e-14 seq161123 89.7 4e-13 seq16096 84.2 2e-11 seq122442 82.4 6e-11 >seq149362 Length=6446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || |||||||| || |||||||| || ||| ||| | || || Sbjct 1496 ACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTC-CGCCCATCCTC 1438 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||||| ||||| || | ||||| || || Sbjct 1437 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 1378 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 1377 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTT 1318 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||| ||||| Sbjct 1317 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 >seq161123 Length=4290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| |||||||| || |||| || |||| |||||||| || || Sbjct 3038 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTT-CGGCCGTCCTCGAGCTGCTTGCC 3096 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | || || || || || | ||||| || || |||||| || Sbjct 3097 AGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTT 3156 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | |||||| || || || |||| ||||| || || || Sbjct 3157 GACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGT 3216 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||| ||||| Sbjct 3217 TTTCACAAAGATCTGCAT 3234 >seq16096 Length=889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || ||||||||||| ||||| | Sbjct 593 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 535 Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || || || ||||| ||||| || |||| | | ||| || || || || Sbjct 534 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 475 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || ||||| | || | ||||| | | ||| || Sbjct 474 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCAC 415 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || || || || |||||||||||||| Sbjct 414 TTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 367 >seq122442 Length=1060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || |||||||| ||| | Sbjct 735 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 794 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| || | ||| |||||||| | || | | ||| |||||||| || Sbjct 795 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGA 854 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | | || | ||||| | | ||||| Sbjct 855 ATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCAACC 914 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || || || || ||||||||||| |||||| Sbjct 915 TCGAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACAAAGATCTGCATA 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423820814786688