Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq144477 91.5 2e-13 seq4302 86.0 8e-12 >seq144477 Length=2901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| || |||||||| || | || |||||||| || || || |||||||||||| | Sbjct 1044 AAACCCGTCCATCTCCGTCAACAACTGATTAATAGTCTGCTCCCTCTCATCATTTCC--A 987 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | ||| | || |||||||||||||||||||| || ||||| Sbjct 986 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 927 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 926 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTCC 868 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGG---GACATTTGATTC 11772 ||||||| ||||||||| | | || | ||| || ||| || | || | || Sbjct 867 CACAAACAGCTCCACAAACTCCGACGCCGCGCAGGAGAAGAACGGCGTGCCA---GCCTC 811 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | || || || || ||||||||||| ||||| || Sbjct 810 ACCAGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 769 >seq4302 Length=1545 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || |||||| ||||| ||||| | || Sbjct 1359 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 1418 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || |||||||| || ||||||||||| |||||||| || Sbjct 1419 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCCTCCACGCA 1478 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || || || | | || || ||||| Sbjct 1479 GGCGAAGGCCACGATCCGCTCCGCGAA 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626343975590400