Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4302 105 7e-18 >seq4302 Length=1545 Score = 105 bits (116), Expect = 7e-18 Identities = 289/433 (67%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || |||||||| || ||||||||||| || ||||| || || || ||||| Sbjct 1487 GCCTTCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTA 1428 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| || | |||||||| |||| ||||| |||||| |||| || || || || Sbjct 1427 AAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAA 1368 Query 60111 GGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTC 60169 |||||||| || || || ||| | ||||| || | ||| ||| || || | | Sbjct 1367 GGCCTCCACTGCGACTTCGC-GTGCCTTCTCTACTCCCTCCT-CCGGATGAA-GCTC-AC 1312 Query 60170 CAAGGATATTCACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCAC 60226 | |||| ||| || || | | || ||| | ||||| |||||| || Sbjct 1311 CGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAGGGAGTTCGTCTG 1252 Query 60227 AGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCA 60286 || ||| | || ||| | | || ||| ||| || ||| |||||||| | Sbjct 1251 CGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACATCGA 1192 Query 60287 GTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAA 60346 ||| ||||| || | || ||| ||| ||| | || | | || | ||| | || Sbjct 1191 GTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATGTGCAGAA 1132 Query 60347 CCCTTTCGACTGGATGGAGACCATCTCGT-TGGAAGGGAAGACCAACTTCTTTGAGAAGC 60405 ||| || || ||||||||| || | || | | ||||||||||| |||||||||||| Sbjct 1131 CCCATTTGATTGGATGGAGCTGAT-TAGTCTTCAGGGGAAGACCAATTTCTTTGAGAAGA 1073 Query 60406 GGGTCGGGGATTA 60418 | || ||||| || Sbjct 1072 GAGTTGGGGAGTA 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547050475042560