Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq120438 96.9 1e-15 seq61937 87.8 7e-13 >seq120438 Length=1127 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25720 CCTTGTCCTCGGCGTAAATCGAAGCCGAGATAATCGCCCCGCCCCACCGGCGCTTCCCGT 25779 |||| || || || ||| ||||| || || || ||||| ||||||||||||| ||| Sbjct 992 CCTTATCTTCTGCCACAATTGAAGCTGAAATGATTGCCCCACCCCACCGGCGCTCGCCGA 1051 Query 25780 AGCAGATCGGCACCGGGTTCCCGCTGGCGGTGGTGTTTCTGGCGCTGCCGAAGGCGTAGC 25839 |||||||| || ||||| ||||||||||||||||| ||||| || || ||||| | Sbjct 1052 TACAGATCGGGACGGGGTTGCCGCTGGCGGTGGTGTTCCTGGCTGACCCAAACGCGTAAC 1111 Query 25840 TGGGCAAGTTCTCCGG 25855 | || | ||| || || Sbjct 1112 TTGGTAGGTTTTCGGG 1127 >seq61937 Length=427 Score = 87.8 bits (96), Expect = 7e-13 Identities = 137/184 (74%), Gaps = 14/184 (8%) Strand=Plus/Minus Query 288 AGGAGGAAACAGCCCATGAAGCACTAAGCCCAGCCGACGACACGGGTCGGCAATCCGCG- 346 ||||| || ||||| |||||| | ||||||||||| |||||| |||||| || || Sbjct 375 AGGAGAAACCAGCCAATGAAGTAGCAAGCCCAGCCG-GAACACGGACCGGCAACCCACGA 317 Query 347 CGTACGTGCCCTACTCAACGGGCCGCCGGGCTGCACT---CAAGCGCGGAG-TAACA-CT 401 || || ||||| |||||| ||||||||| |||||| | || || | || |||| || Sbjct 316 CGGAC-TGCCCCACTCAATGGGCCGCCGAGCTGCAGTTGACAGTCGTGTAGCGAACACCT 258 Query 402 GATACCCCATGACCA--GCGCTGTATGCCGATTGAAG-GCGTTGCGAGGGAAGCCCAAGG 458 | |||||||||||| ||| | | ||||| || | | | || |||||||| ||||| Sbjct 257 G--ACCCCATGACCACCACGCCG-AGGCCGAACGACGCGAGGTGATAGGGAAGCTCAAGG 201 Query 459 CCAA 462 |||| Sbjct 200 CCAA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194321746706528