Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq55122 349 9e-92 seq23771 315 2e-81 seq132448 237 4e-58 seq41263 210 6e-50 seq23360 176 1e-39 >seq55122 Length=457 Score = 349 bits (386), Expect = 9e-92 Identities = 353/455 (78%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 6364 GCTTGATCG-TCATCCAGGCCGCGTAGCGAGTGCGGTGATGTCGGGTGTGGATGGCGGTG 6422 |||||| || ||| ||| | |||| || |||||| | || || || ||||||||||| Sbjct 454 GCTTGAACGGTCAGCCACTGCCCGTAACGGGTGCGGCGGTGGCGCGTATGGATGGCGGTC 395 Query 6423 GCGTTGTAGTGCCGCATCCAGCGTCCGGCCAGCCCGTTGATCTCGTCCAGAGTGCGCGGT 6482 ||||||| || |||||||| |||| ||| |||||||||| ||||| || | | Sbjct 394 GCGTTGTGGTAGCGCATCCACTGTCCCGCCCAGCCGTTGATCTGCTCCAGGGTTTCGGCT 335 Query 6483 TTCTGCATCAGTTGCAGGCC-ACTTTCAAACTCACGCTCGACGATGTTGTGGGCCTGCTC 6541 ||||||| | || ||||| ||| | ||||| ||||| || |||||||| ||||| || Sbjct 334 TTCTGCAGC--TTCAAGGCCGACT--CGAACTCGCGCTCAACAATGTTGTGCGCCTGTTC 279 Query 6542 GACCTGGCCCTTGGCGCGTGCGTTACCGACTTTGTTGATGATCAGTTCGATGCCCAGGGC 6601 |||||||| |||||||| |||||||| || |||||||||||||| ||||||| ||| || Sbjct 278 AACCTGGCCTTTGGCGCGAGCGTTACCCACCTTGTTGATGATCAGCTCGATGCTCAGCGC 219 Query 6602 GCGACACAGGTTGCGGAACATCGAGGAGGTCATGGCCGCACCGGGGTCGGTCATGATCAT 6661 |||| ||||||||| |||| || |||||||||||||| ||||| |||||||| || Sbjct 218 CTTGCACAAGTTGCGGAAGATCGCCGAAGTCATGGCCGCACCAGGGTCCGTCATGATGAT 159 Query 6662 GAAGGGCACGCCATGGAACGGGTCGGTATCACCACGCTTGACCATCGCGCTGATCAGTAC 6721 ||| ||||| |||||||| || ||| | || |||||||| ||| ||||||| || Sbjct 158 GAACGGCACACCATGGAAGGGATCGTTTTCGCCACGCTTTTGCATGCAACTGATCAACAC 99 Query 6722 ATGGCAGAGGTTCTCCGCGCTTTCAGCGCCGAGCACGTAATGCACGTACAGGGTACCGCT 6781 | ||| ||||| ||||| ||| ||||| |||||||| ||||| || | ||| ||||| Sbjct 98 GTTGCACAGGTTTTCCGCAGATTCGGCGCCCAGCACGTACTGCACATAGATGGTGCCGCT 39 Query 6782 GGTGTGGTCCGTGATGACGTAACGCCATAGGCGCT 6816 |||||| || ||||||||||| ||||| | |||| Sbjct 38 GGTGTGATCGGTGATGACGTAGCGCCACAACCGCT 4 >seq23771 Length=731 Score = 315 bits (348), Expect = 2e-81 Identities = 315/409 (77%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 1990 CTTCTGCGTGCTCAGATAGTCCTTGCGCGCCTTCTGTAACTGGCGCTCCAGAACCTGGTA 2049 |||||| || ||||||||| || || ||||| | ||||||||||||||||||||| Sbjct 1 CTTCTGTGTCGCAAGATAGTCCCGTCGAGCTTTCTGCAGCTGGCGCTCCAGAACCTGGTA 60 Query 2050 GGCATAACCCGTCAGCTCCGGCGCTGCCGCGCAGCCAACGAACAGGAACGATGCGCTTTC 2109 ||| || |||| ||| || || || || | || |||| ||| | ||| |||||| || Sbjct 61 GGCGTAGCCCGCCAGTTCTGGTGCCGCTCCACAACCAATGAAGATGAAAGATGCGTGCTC 120 Query 2110 GCGCCAGGAGGTACAGATGATCAGGTGTGTGCCGAAGGCATGGCAGCACACCTGTGCGAG 2169 | ||||| | || |||||| | ||| || ||||| || | ||| || ||||| || Sbjct 121 GAACCAGGGAGCACTGATGATGAAGTGGGTCCCGAATGCTTCTGCGCAGACGTGTGCCAG 180 Query 2170 GCGTACCCGCCAGGCCGGCGGCTTGCCATCCGAACCGGCGGGAACCCTGGCTTCGCCAGC 2229 ||| |||||||| || || |||| | ||||| || || | || |||| || || || Sbjct 181 GCGCACCCGCCAAGCGGGTGGCTCACTCTCCGAGCCTGCTGCGACTTTGGCCTCTCCGGC 240 Query 2230 CATGCTGGCTAGCACGTCGCCCATCTCCAGGTTGTAGGCTTCCATCAGCTTGTGGGCGTG 2289 ||||||||| || ||||| ||||| ||||||||||| || |||| ||||||||||| || Sbjct 241 CATGCTGGCAAGGACGTCCCCCATTTCCAGGTTGTATGCGTCCAAGAGCTTGTGGGCCTG 300 Query 2290 ACGCAGCGCGATCTCGGCCTCGTTCGGGTTGGAACCCCGCCCCTTGGCCATTTCCAGGCA 2349 ||||| ||||| || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 301 ACGCAAGGCGATTTCCGCCTCGTTTGGGTTGGACTCCTTACCCTTGGCCATCTCCAGGCA 360 Query 2350 CTTCTTGATCTTGTCGAGGATACGGTCCTGGTCCATGTCACACCCCCGC 2398 ||||||||||| |||| |||||||||||||||| | |||||||||| Sbjct 361 TTTCTTGATCTTTTCGAAAATACGGTCCTGGTCCACGCTACACCCCCGC 409 >seq132448 Length=1889 Score = 237 bits (262), Expect = 4e-58 Identities = 294/399 (74%), Gaps = 5/399 (1%) Strand=Plus/Minus Query 14175 CAGCACGCCAACGAGCGCGCCCAGGCCCTTCAGGACAGCCTGGTCCAG-TACAAGCAGCA 14233 ||||||||| | | ||||| || | |||||||||||| ||| | || || ||| Sbjct 1105 CAGCACGCCGAGCAACGCGCTGCTGCGGCTAAGGACAGCCTGGAGCAGCTGCAGGC-GCA 1047 Query 14234 GGTCGCGCGCGCCAACCAGGCCGAGGAGCAACTGCTGCAGGTACAGCAGCAACTGACCGA 14293 | | | ||||| ||||||| || || | |||| |||| ||||||| || ||||| Sbjct 1046 GACCTCCCGCGCAAACCAGGTTGACCAGGAGCTGCAGCAGACCAAGCAGCAGCTCACCGA 987 Query 14294 CACCCGACACCAACTCCAGGAGCGAATCGCCCATGTATCGACCGCCTACCGAGCGGCACC 14353 | || ||| | ||||||||||||||| || |||| |||||| ||||| |||| || Sbjct 986 CGTCCAACAAAAGCTCCAGGAGCGAATCCCCAATGTCACGACCGTCTACCTGCCGGCGCC 927 Query 14354 TGGTGCTGCGCCTACTGCTATCCCTCGCTGTGTCTTCACTCGCGGCTGGGTGCGCGACTT 14413 || ||| |||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct 926 TGCTGCCACGCCTACTCCTATCCCTCGCTGTGTGCTCACTGCTGGCTGGGTGCGCGACTT 867 Query 14414 CAACACCGCCCTCGG---TGCCGGTTTGCCCGCCACAGGAGCGCGCACCGCTTCCCCCGG 14470 |||| |||||||| | || | ||| |||| ||| || || || ||| Sbjct 866 CAACCTGGCCCTCGGAGCTTCCCCTGTGCGAGCCAGCACCGCGGGCGCCAACACCGCCGT 807 Query 14471 CACTCAAGCAGCGACCTGGCCCGCCGCCGGTTCTGACGCCGAGCTACTGGAAAGCGGCGT 14530 | || | | ||| |||||||| || ||||| |||| | || ||| |||||||||| || Sbjct 806 CCCTGATGGAGCCGCCTGGCCCACCCCCGGTACTGAAGAAGAACTATTGGAAAGCGGGGT 747 Query 14531 CACTCCGGCGGACATCCTGGCCTTTGCGCAGGACTACGG 14569 ||| || || |||||||| |||||||| ||||||||||| Sbjct 746 CACCCCCGCAGACATCCTTGCCTTTGCCCAGGACTACGG 708 >seq41263 Length=540 Score = 210 bits (232), Expect = 6e-50 Identities = 269/371 (73%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 6792 GTGATGACGTAACGCCATAGGCGCTGTTTCTCGATGCGCTTGAGATTCTCTGGCTTGCCG 6851 ||||||||||| ||||| | |||| ||||| || || || ||||||||| Sbjct 539 GTGATGACGTAGCGCCACAACCGCTTGCGTTCGATCTTTTTCAGGTTGGTCGGCTTGCCG 480 Query 6852 TCGTAGAACTCGGCCTTATTCATGGCGCGCGCGCCGTCATTGGCCAGGTAGAACTGAGTG 6911 || ||||||||||||| |||||| ||||| |||| | ||||||||||||| ||| Sbjct 479 TCATAGAACTCGGCCTGGCTCATGGTCTTGGCGCCATCATCGTCCAGGTAGAACTGGGTG 420 Query 6912 GAGATCGAGGCGTCGATCTGCCAGACGTGGTTGGGATGCAGACTGACCAACTCGACCGCT 6971 |||||||| ||||| || |||||||||||||| || ||| ||||| ||| | || || Sbjct 419 GAGATCGAAGCGTCAATTTGCCAGACGTGGTTCGGGTGCCGACTGGCCAGCGAAACGGCC 360 Query 6972 GGGGCCGGGCGCAGTAGTTGCTCAGGGTGCAAGCCATAGGCACGCAAGGCCCGGCCTATA 7031 || |||| |||| ||||| || ||||||| | |||| ||||| || ||| ||| Sbjct 359 GGCTCCGGTTGCAGCAGTTGATCCGGGTGCAGACGGTAGGTACGCAGCGCACGGGTGATA 300 Query 7032 GCGCTGAGCGACATGAGCGTGACTTCACCAGTACGGTGATCCACAGAGCCTGCGACGATC 7091 | ||||| ||||| | || |||||||| | ||| || || || | |||| Sbjct 299 GAGCTGATCGACAGCGGTACGAACTCACCAGTTTTCTCATCGACGCGACCGGCCAGGATC 240 Query 7092 TTGCCGTTGTTGCGAAGACGCTCGACGGCGCGCTCCAGGGTGCTGAGTTGCTTGTCGTTA 7151 ||||| ||| |||| || ||||| || || ||||| | |||| ||| ||||||| ||| Sbjct 239 TTGCCATTGCTGCGCAGCCGCTCCACTGCACGCTCAACGGTGGAGAGCTGCTTGTTGTTG 180 Query 7152 TCGCGGATGGA 7162 ||||||| || Sbjct 179 GCGCGGATCGA 169 >seq23360 Length=738 Score = 176 bits (194), Expect = 1e-39 Identities = 400/591 (68%), Gaps = 27/591 (5%) Strand=Plus/Plus Query 5168 CGAGGAAGCCGTCATGGCGTGCGGTTTGGTACATCGATTCGCGGATGTAGCGAATATCGC 5227 ||||||| ||||||||||| || || ||||| || || |||| |||||| |||||| Sbjct 1 CGAGGAAACCGTCATGGCGAGCCACCTGATACATGGACTCACGGACGTAGCGGATATCGG 60 Query 5228 CGCTGAAATACATGTCTTCGGCGCAGCGTAGATCGCCAAACGGGTCGACCATCACGCCGA 5287 ||| | |||||||||||||||| | || || | | ||| ||| | | ||||| Sbjct 61 GGCTTACATACATGTCTTCGGCGTCCTGCAGCTCATCGAGCGGATCGCGGAAAAGGCCGA 120 Query 5288 AGGCGCGCTT---GGTGTCTGGCCGCAGGGATTGTTTTGCCATTAGCATGTCGGGGCACT 5344 | | || |||| |||| ||| ||||| |||||||||||| ||||| Sbjct 121 ATT---GTTTTCGGGTGGCTGGTGTCAGCACCTGTTTGGCCATTAGCATGGGCTCGCACT 177 Query 5345 CCTG---GTTTTCGTGATTGGTTTCCGG---GGTTGCAGGAGTCGCCGCGTTGGCGCGCG 5398 |||| |||| | || | | |||| || || |||||| | | | |||||||||||| Sbjct 178 CCTGTTCGTTTACTTGGTCGTTTTCGGGTGGGGATGCAGGGGCCTCGGCGTTGGCGCGCC 237 Query 5399 GCGACTCCACTTCTTCTTCCAAGGCGGC---GATGTC-GCCGTCTTG-CGCACCAACGT- 5452 | | |||| |||||| ||||| || |||| | ||| ||| ||| | || Sbjct 238 GGGGCTCCGTTTCTTCA---AAGGCTGCAGCGATGGCCGCCACATTGACGCCGCGCTGTG 294 Query 5453 CATAGAGCCAGTCGGCCATACGGCCCCACAGCTCCTGCTTGTCGATGGACTTGGGCCACT 5512 || || | || | || || ||| |||| | | || | || |||||||||| Sbjct 295 CAAGGAAC--GTTTGA-ATTCGCCCCTGCAGCGCGTTGCGATCCAGTGATTTGGGCCACT 351 Query 5513 GGTCGTGATTGACCAACTGAGCGATGGCTGCCGGGCTGAGCTTCATCGCCCTGGCCAGAT 5572 ||| |||||||| || ||||||||| || ||| |||| || | | ||| | |||||| | Sbjct 352 GGTTGTGATTGATCAGCTGAGCGATAGCGGCCTGGCTCAGATCGACCGCTCGGGCCAGCT 411 Query 5573 CAGCCTGGCCAAGGCTGAGGGTTGCGAGTACTTCCTTCAGACGCAGCATTA---CTCACC 5629 | ||||| | ||| ||||| || ||||| || || ||| | | ||| Sbjct 412 CGGCCTGTGGGACCTTGATCTCGGCGAGCACGTCCTTGAGCTTCAACATCAGGCATTACC 471 Query 5630 CCCTACCAGGCGCAGGCTTGGGCGTGCAGGTGCCTGCAACTGCTGAACGATGCTGTCGAG 5689 ||||| | |||||||| ||| || || || || ||| |||||| |||| |||||| Sbjct 472 TCCTACTACGCGCAGGCCTGGCCGGGCTGGCGCACGCAGTTGCTGAGTGATGGCGTCGAG 531 Query 5690 TTGCTCCTCCATAGCGCCGTCCGGGTAGTTGGTCTTGAGCCACTCCATGGA 5740 || || ||| |||||| |||||| ||| ||||||||| ||||||| Sbjct 532 CTGATCTTCCGGCACGCCGTTGGGGTAGCTGGACTTGAGCCAGGCCATGGA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126252799575840