Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq144026 100 4e-16 >seq144026 Length=6135 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 185039 TGGTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAG 185098 |||| ||| | || || ||||||||| | |||| |||||| |||| | || || | | Sbjct 4195 TGGTTTGGTATTGCTACCGCACATGACCTCGAGAATCATGATGATATATCTGAGGA-ACG 4137 Query 185099 T-TATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGT 185157 | | ||||| || | |||||| | || || || | ||||| || ||||| ||| Sbjct 4136 TCTTTATCAGAATATTTTTGCTTC----TTCGGGCAATTAGCAATAATTTTTCTGTGGAC 4081 Query 185158 TGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACCC 185217 | | || ||| | ||||| |||| ||||||| | | ||||| | ||| ||| || Sbjct 4080 TTCTGGAAATCTGTTTCATGTAGCTTGGCAAGTTTATTTTGAGGCATGGGTACAAGATCC 4021 Query 185218 ACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAA 185269 |||||| | |||||| || || ||| ||||||||||||||||||||| Sbjct 4020 TTTACATGTAAGACCTATTGCTCACGCAATTTGGGATCCTCATTTTGGTCAA 3969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629730049971840