Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq72254 116 3e-21 seq149362 100 2e-16 seq161123 93.3 4e-14 seq117806 84.2 2e-11 seq16096 84.2 2e-11 >seq72254 Length=390 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || ||||| ||||| ||||| ||||| | || || Sbjct 69 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 128 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| | Sbjct 129 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC-T 187 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | ||| | | | || || |||||||| || | |||||| | | Sbjct 188 GAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 247 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || || |||||||||| Sbjct 248 TGCCGGTGAGGGTTTTCACGAAAATTTGCATCT 280 >seq149362 Length=6446 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| ||||||||||||||||| || || | || || Sbjct 1725 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGGGTGCGGCCATCCTC 1666 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 1665 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 1606 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| ||| || |||| ||||| | || Sbjct 1605 GATCTTTGCCTTGACATTATCAATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTT 1546 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| ||||| Sbjct 1545 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 1516 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || ||||| || ||||| || ||||| | | || || Sbjct 2341 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTC 2400 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || | ||||||||| | ||| | || ||||||||| Sbjct 2401 GAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 2460 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 |||||| |||| | | | || || ||| ||||| |||| || ||| | Sbjct 2461 AATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTT---TCCACTTCCAAAGTAATAGT 2517 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| || || |||||||||||||| Sbjct 2518 TTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||||||||| ||||| ||||| || || || || | || || Sbjct 2797 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGGCCATCCTC 2856 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| | Sbjct 2857 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 2915 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || |||| | | | || || ||| ||| || |||| ||||| Sbjct 2916 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 2972 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 2973 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 3006 >seq117806 Length=5035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 3656 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 3597 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| || |||| ||| Sbjct 3596 GATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3538 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 3537 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 3478 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 3477 CGAAGATCTGCAT 3465 >seq16096 Length=889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| || || ||||| || || | Sbjct 353 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCAGCAAGAGTGCGACCA 294 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 293 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTG 234 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACT--CCACGTCCACCGTG 39246 ||| ||| | | || |||| | | | ||||| | ||| | || |||| ||| Sbjct 233 TCC-TGAATCTTTGCCTTGACATTATCAATTGTATC--TGAACTTTCAACCTCCAAGGTG 177 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| || || || || |||||||||||||| Sbjct 176 ATTGTCTTTCCGGTAAGGGTCTTGACAAAGATTTGCAT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428419930652912