Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq149362 107 1e-18 seq161123 102 5e-17 seq72254 93.3 3e-14 seq37850 93.3 3e-14 seq25063 93.3 3e-14 seq204338 82.4 5e-11 >seq149362 Length=6446 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 1288 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 1347 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | ||| || ||||| || || | || || || || Sbjct 1348 GACACTATTGACAATGTCAAAGC-AAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCA 1406 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | || || | | || ||||| Sbjct 1407 ACAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGGACACTCGCTGACTACAA 1466 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||||||||| | ||||| ||| Sbjct 1467 CATCCAAAAAGAGTCCACTCTCCATTTGGTT 1497 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| | || ||||| | Sbjct 1516 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGTTCT 1575 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | | ||||| || || |||| |||||||| Sbjct 1576 GATACAATTGATAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATACCCCCAGATCA 1634 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | ||||| | | |||||| || Sbjct 1635 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTATAA 1694 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1695 TATCCAAAAGGAGTCTAC 1712 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || || ||||| || ||| | ||||| || | | Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| ||| ||||||||||| | || ||||| || Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || || |||| | || | | |||||||| Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | ||||| || Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGT 2408 >seq161123 Length=4290 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 3234 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 3175 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || |||| | | ||||| || || | || ||||| || Sbjct 3174 GACACTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 3116 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || |||| || || | | || ||||| Sbjct 3115 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 3056 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 3055 CATTCAAAAAGAGTCCAC 3038 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| | || ||||| | | Sbjct 3006 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGCTCT 2947 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| || || | || |||||||| Sbjct 2946 GACACAATCGATAATGTCAAGGCAAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATCA 2888 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | || || | | |||||||| Sbjct 2887 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGTACGCTCGCAGATTACAA 2828 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 2827 TATCCAAAAAGAGTCCAC 2810 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| ||||| || || || | || || || | Sbjct 2322 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 2263 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || || | || || || || Sbjct 2262 GATACAATTGATAATGTGAAAGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCGGACCA 2204 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || || || || ||||| | || ||| ||| |||||||| Sbjct 2203 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAA 2144 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 2143 CATTCAAAAGGAGTCAAC 2126 >seq72254 Length=390 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||||||||| || || || ||||| || || || || || | Sbjct 278 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 219 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || ||| ||||| || || | || || || || Sbjct 218 GACACCATTGACAACGTTAAGGC-CAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 160 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | || || | | |||||||| Sbjct 159 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 100 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 99 TATCCAGAAGGAGTCGACCCTCCATTTGGT 70 >seq37850 Length=568 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || |||||||||||||| || || | | Sbjct 561 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAGAGCTCT 502 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || || | || || || || Sbjct 501 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 442 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || || |||| || | || ||||| | ||||||||| Sbjct 441 CAGAGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGGCCGATTACAAT 382 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 381 ATCCAGAAGGAGTCCACCCTCCATTTGGT 353 >seq25063 Length=710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | |||||||| || ||||| || || || || | | Sbjct 596 ATGCAGATCTTCGTCAAGACCTTGACGGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 537 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 536 GACACCATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGAATTCCCCCGGACCA 478 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || || || || | ||||| | | |||||||| Sbjct 477 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAA 418 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || || ||||| | ||||| || Sbjct 417 CATCCAGAAGGAATCCACCCTTCATTTGGT 388 >seq204338 Length=3429 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || || ||||||||| | || || |||||||| || ||| ||||| Sbjct 2926 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 2985 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | ||| | | ||||| |||| ||||| ||||| || | || |||||||| Sbjct 2986 GATGGAAGAACTCTTGCAGATTATGACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 3045 Query 23824 AGGTTGCGAGGAGGA 23838 ||| || | || ||| Sbjct 3046 AGGCTGAGGGGTGGA 3060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337123810352192