Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq161123 86.0 5e-12 seq149362 86.0 5e-12 >seq161123 Length=4290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| |||||| || || || || |||||||| |||| || | ||| || Sbjct 2341 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTC 2400 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 2401 GAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 2460 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 |||||| || |||| | | || |||| | | || ||| | ||||||||| Sbjct 2461 AATTTTCGCCTTGACATTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATAGTT 2518 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||| ||||||||| Sbjct 2519 TTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 2551 >seq149362 Length=6446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| ||| || ||||| ||||| |||||||| |||| || || || || Sbjct 2409 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 2350 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 2349 AAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 2290 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||| || || | | | || |||| | | || ||| | ||||| ||| Sbjct 2289 AATCTTTGCCTTGACGTTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATGGTT 2232 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||||||||||||| Sbjct 2231 TTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408587240859216