Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq7292 167 5e-37 seq118405 95.1 3e-15 >seq7292 Length=1256 Score = 167 bits (184), Expect = 5e-37 Identities = 374/554 (68%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 16159 GGCTGATCTGCGGGCCATCTTCGCCCTGCGGCCGGCCGCCGCTATCGAGTACCTGGAGCG 16218 ||| ||||| || ||||||| |||| || |||||||| |||| ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 16219 AAAGGGATTCGCCATCACTTGGAACTGGCATGACGTTGACGCGGCCACCCACGGCCGCGC 16278 || || | || | || ||| | ||||| ||| | || || |||||| || || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAGC 421 Query 16279 TCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGCTCCAGGACATTCGCGACGCCCTTGT 16338 | |||||||||| || |||||||| ||||| |||||| ||||| | ||| Sbjct 422 GTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCA-TTGG 480 Query 16339 CGAGAACC-TGGAGCGCGGCGAGACGCTACGAGACTTCAAGCGAA--ACCTGCGGCCGAC 16395 ||| || || || ||| |||| || | | |||| | || | |||| ||| Sbjct 481 AGAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCA--CCAAGGAACTGCAGCCTGT 538 Query 16396 CCTGGAGGCGAAAGGCTGGTGGGGTCGCCAGGTGGTAGTCGC--GCCGGATGGCGGCGCC 16453 ||||||| |||| |||||||| ||||| | |||| ||| | ||| || Sbjct 539 CCTGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAG--GGCAATGCG 596 Query 16454 GAGGTTGCACAACTGGGCAGCCCGCGCCGCCTGGATACCATCTACCAGACCAACATGCAG 16513 ||| | | || ||||| ||||| ||||| || | || ||||||||||||||| ||||| Sbjct 597 GAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCAG 656 Query 16514 TCGGCCTATATGGCAGGGCGCTACGCGGCCGCCTACGAAGCCAGGG---AAACCCACCCT 16570 ||||||||||| || ||| | | |||| || | || || | ||||| || Sbjct 657 AGCGCCTATATGGCCGGTCGCAAATC---CGCCATGGAGGACACGGTCGAGACCCATCCG 713 Query 16571 TACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGCCCAGCCATGCCGCCCTGCAT 16630 ||||||| || | ||||||||||||||| ||||| || |||||||| || || | Sbjct 714 TACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAAC 773 Query 16631 GGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCACATCACCCCGCCCAATGGCTAC 16690 || |||| | | ||||| ||||||||| |||| ||||||||| || | Sbjct 774 GGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTTT 833 Query 16691 AACTGCCGGTGCCG 16704 |||||||| ||||| Sbjct 834 AACTGCCGCTGCCG 847 >seq118405 Length=3401 Score = 95.1 bits (104), Expect = 3e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 24540 AGCGCCGAGGCGGCCCTGGTCCAGTTTGGCCAGGCTCTGGCGTCGGGCGTTCTGCGCGGC 24599 || || || || || |||| ||||| || || ||| |||| || || || || ||||| Sbjct 1402 AGTGCAGAAGCTGCTTTGGTGCAGTTCGGTCAAGCTTTGGCTTCAGGTGTGCTTCGCGGT 1461 Query 24600 GAGGAATTCAACTCGGTCAGCGAGCAGGCGCCCGCGCTGCTGAAAGCAATTGCCGATGGC 24659 || ||||| || || | ||||| || || | | | |||||||| ||| ||| Sbjct 1462 GAAGAATTTAATTCAATTTCAGAGCAAGCACCGGGTTTATTAAAAGCAATCGCCACAGGC 1521 Query 24660 CTCAACGTCAATATCGGCGAGCTTCGCAAGATGGCGAACGAAGGCCAGTTGACGGCTGAC 24719 | ||||||||||| ||||| ||||| || ||||| || ||||| || ||| | ||||| Sbjct 1522 TTAAACGTCAATATTGGCGAACTTCGTAAAATGGCAAATGAAGGTCAATTGTCTGCTGAT 1581 Query 24720 GT 24721 || Sbjct 1582 GT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116792218159008