Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq143833 100 4e-16 seq105402 98.7 1e-15 >seq143833 Length=506 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | |||| |||||| || ||| ||||| ||||| Sbjct 391 CCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 450 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATT 76863 || ||||| |||||||||||| ||||||||| ||| |||||||| || Sbjct 451 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 500 >seq105402 Length=314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858 || ||||| ||||| || ||||| |||||||||||| ||||||||| ||| |||||| Sbjct 1 ATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGA 60 Query 76859 ATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC 76918 || || || || | || ||||| || || ||| ||| | |||||| ||| Sbjct 61 ATGTTGTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTC 120 Query 76919 AATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||| ||||| || || |||||||| ||||| | ||| || |||||| Sbjct 121 AAGGTATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711018174919680