Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq25507 114 4e-21 seq20504 95.1 3e-15 seq126159 93.3 1e-14 >seq25507 Length=704 Score = 114 bits (126), Expect = 4e-21 Identities = 220/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 40763 GGGCTTTTTCATTTCCGCCCCGGCGAGGGGA-ACTGAG-ACGATGAAGATGCCTGACAAA 40820 ||||||||||||||| ||||||| ||||||| | ||| | | || ||||| || ||| Sbjct 314 GGGCTTTTTCATTTCTGCCCCGGAGAGGGGATATCGAGTATGTCCAACATGCCAGATAAA 255 Query 40821 CCCGACACTTGGGCGGCTCTGCTCGCCTGGCTGAGCCAGCATGCGCCGATCATCTACGCT 40880 || ||||| ||||||| ||||| || ||||||||| |||||||||| | | || || Sbjct 254 CCAGACACCTGGGCGGTGCTGCTTGCTTGGCTGAGCTCGCATGCGCCGCTGCTGTATGCC 195 Query 40881 TCCCTGCTGTCGTGGGCCATGGCTATGGCCAGGATTATCTACGGCGGCGGCACTCGCCGG 40940 | || |||| | |||||| |||||| |||||||| ||||| || || || Sbjct 194 GGCGCCCTCTCGTTCGTGATGGCTGCTCTCAGGATCATCTACGGTGGCGGAACCCGTCGC 135 Query 40941 CAGGCCCTCTTGGAGGGCGCGCTGTGTGGTGGGCT-AGCGCTGACGATCAT--CAGCGGC 40997 ||||| | |||||| | ||||| ||| | || | || ||| | || || Sbjct 134 CAGGCTGTACTGGAGGCATCTCTGTGCACACTGCTGACTGCCGGCG--CATTCCCGCTGC 77 Query 40998 TTCGAGTTCTTCGGCGTGCCGCAGAGCATGGCCACCTTCATTGGTGGCTGGATCGGCTTC 41057 | |||| ||||||| ||||||||| | | ||| | | | || || | || |||||| Sbjct 76 -TGGAGTACTTCGGCTTGCCGCAGAACCTTGCCGCAGGCCTGGGCGGTGGCATTGGCTTC 18 Query 41058 CTGGGTGTCGAAAAGAT 41074 | || || | ||||| Sbjct 17 ATCGGCGTGAAGAAGAT 1 >seq20504 Length=790 Score = 95.1 bits (104), Expect = 3e-15 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 32545 CAGACCACTCTCCGATACAGCCTGGCGATGGGGAGCCAGGTGGATCGGGCAGTTAACGTC 32604 |||| ||| ||||||| ||||||| ||||||||||| ||| | ||||||||||||||||| Sbjct 652 CAGATCACACTCCGATGCAGCCTG-CGATGGGGAGC-AGG-GCATCGGGCAGTTAACGTC 708 Query 32605 AGGCTGACGTGGCGCT 32620 |||||||||||||||| Sbjct 709 AGGCTGACGTGGCGCT 724 >seq126159 Length=1192 Score = 93.3 bits (102), Expect = 1e-14 Identities = 261/391 (67%), Gaps = 16/391 (4%) Strand=Plus/Plus Query 35598 GTAATCCTCGTCTGCATGCTCTTCTCGGTTGAAGCTTCGCAGGCGAAGACCTCCACCGGG 35657 ||| |||||||||| ||||| || ||||||||||| |||| ||| | || ||||| || Sbjct 584 GTACTCCTCGTCTGGGTGCTCGTCCCGGTTGAAGCTGCGCATGCGGATGCCGCCACCAGG 643 Query 35658 AAGTCGGTAGAGGTATTTCACTCGCAGCATGCCTTCGTGCTCCAGGGCATATACCTCTCC 35717 || ||||| ||| ||| || | ||| ||| ||||| || | ||| || | || || Sbjct 644 TAGGCGGTAAAGGGTTTTTACCCTGAGCTGGCCGTCGTGGTCGATGGCGTACATCTTGCC 703 Query 35718 ATCCACGACCTTGGTGGTAGCCCT-GTCGATGCCTATGGTCGCTCCGCTCATGATG-AGG 35775 |||||| ||| |||| | ||| | ||| | ||| | ||| ||| || || | | Sbjct 704 ATCCACAACCGCGGTGCT-GCCTTGGTCAACGCCGACGGT-ACTCTTGTCGGGAAGAACC 761 Query 35776 GGTTCCATGCTGTTGCCCGTGATGCGAGCACACACCGCGGCAGTCGGATCAACGCCC--G 35833 || |||||||| ||||| ||| | || || ||| | || | ||| ||| | Sbjct 762 GGCTCCATGCTATTGCCGCTGACCGTCACGCAAACAGCGTCCCCAGGCTGAACACCCTGG 821 Query 35834 CCGCTCTAAG---GGTTGCGTAAGAG-AACCTAAGCTTGCGTCCAGGCATCTCCTGAACA 35889 | || | | | | |||| ||| | | ||| ||||| | || || || || Sbjct 822 CGGCGCAATGTGAGCTTGCCAAAGCGCAGCCTCTGCTTGTG---AG---ACTGCTCTACT 875 Query 35890 GTCGTTCGACCTGATCCGGCAGCCAATTCAACTTCCTTGTAGAGCGGCAGTTCGACTTCG 35949 || || || |||||||| | |||||||||||| | ||||| || || ||| Sbjct 876 ACTGTGCGGCCGCTTCCGGCAGATAGCTCAACTTCCTTGAGAAACGGCACCTCAACCTCG 935 Query 35950 TCATCATCAAGAGGGGTGGAGTCGTCCCAGG 35980 || ||||| || || ||| ||||||||||| Sbjct 936 TCGTCATCCAGTGGCGTGTCGTCGTCCCAGG 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138011497936032