Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq105100 102 2e-17 seq118902 91.5 4e-14 >seq105100 Length=315 Score = 102 bits (112), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 23165 CAGAATCAATTCGATGCACTAGCATCTTTCACATATAATCTTGGTGA--AACCAATTTAG 23222 || ||||||||||||||| | | ||||| | ||||| | || || || |||| Sbjct 309 CAAAATCAATTCGATGCATTGGTTTCTTTAGCTTATAACATCGG-GACTAATGCTTTTAA 251 Query 23223 CAAATTCAACTTTATTGAAGAAACTTAATAAAGGTGACTATCAAGGCGCTGCTGACCAAT 23282 || ||||||||| ||||| | || ||| || ||| ||| || || || |||| Sbjct 250 -AACGTCAACTTTAGTGAAGTATCTGAATGCTTTAGATTATAAAGCTGCAGCGGATCAAT 192 Query 23283 TCCTTGTCTGGAATAAGGCAGGAGGCAAAGTTATGAAAGGTCTAGTTCGTCGCCGAGAAG 23342 | || || |||||||| || || || | || |||||||| | ||||| ||||| |||| Sbjct 191 TTCTGGTATGGAATAAAGCGGGCGGTAGTGTGTTGAAAGGTTTGGTTCGCCGCCGTGAAG 132 Query 23343 CAGAACGAGCACTCTTTTTAAAGAAGTAA 23371 |||| ||||| | ||||||||||| ||| Sbjct 131 CAGAGAGAGCATTATTTTTAAAGAAATAA 103 >seq118902 Length=7414 Score = 91.5 bits (100), Expect = 4e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33354 CCTAACAAACGTCCAGTTAATG-CTGATCTCCGCGAATCTGGCCAATTGGAGCAGGATGC 33412 || |||||||||||||| |||| | || | || ||||| || | | ||||||||||| Sbjct 7412 CCAAACAAACGTCCAGT-AATGTCAGACTTACGTGAATCGGGTGCAATCGAGCAGGATGC 7354 Query 33413 GGACGTGATTCTATTCATTTACCGCGACGAAGTTTACGACAAGAACTCAAAAGATGCAGG 33472 || | ||| | || |||||||| || |||||||| |||| | || ||||| ||||| Sbjct 7353 CGATTTAATTATGTTTATTTACCGTGATGAAGTTTATAACAAAGAATCTAAAGAAGCAGG 7294 Query 33473 AACTGCTGAAATCATCATCGGAAA 33496 || || ||||| || ||||| || Sbjct 7293 TACAGCAGAAATTATTATCGGTAA 7270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129942554001568