Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq117806 152 5e-32 seq72254 120 3e-22 seq126729 109 5e-19 seq134381 107 2e-18 seq149362 102 8e-17 seq25063 100 3e-16 seq210190 96.9 3e-15 seq16096 96.9 3e-15 seq161123 93.3 4e-14 seq29583 87.8 2e-12 seq210616 86.0 6e-12 >seq117806 Length=5035 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | ||| || || || || ||||||||| ||||| ||||||| Sbjct 3693 CGCCACCGCGGAGGCGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 3634 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| |||| |||||||||||||||||||| || |||||||| ||||||| | Sbjct 3633 CGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 3574 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||||||| || | || || | ||| | | | |||||| |||||| Sbjct 3573 GGATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCC 3515 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || ||||| || || || ||||| ||||||||| Sbjct 3514 ACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 3464 >seq72254 Length=390 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || || ||||||||| || || || || | Sbjct 52 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 111 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| ||||| ||||||| ||| Sbjct 112 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 171 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | |||| | | | ||||| |||||||| Sbjct 172 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 230 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || || || |||||||| ||||| Sbjct 231 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 278 >seq126729 Length=3148 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| |||||||| || | | Sbjct 779 CCACCACGGAGACGAAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTATAATCTGCG 720 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||||||| || || | ||| ||||| | ||| Sbjct 719 AGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCTGGGGGG 660 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || || | ||| | | | |||||| |||||| Sbjct 659 ATGCCCTCCTTGTCC-TGGACCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCCAC 601 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || ||||| || || || ||||| ||||||||| Sbjct 600 CTCGAGGGTGATGGTCTTGCCCGTTAGGGTTTTCACGAATATCTGCATG 552 >seq134381 Length=6558 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||| || || || || ||||||||| || || ||||| | Sbjct 4107 GCCACCACGAAGCCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCTGC 4166 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| ||||||||||| ||||| || || || | ||||||||| | || Sbjct 4167 GAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGGTCTGGAGG 4226 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || |||| | | | | | |||||| ||| | Sbjct 4227 GATGCCCTCCTTGTCC-TGGATCTTGGCTTTGATGTTGTCGATGGTGTCGGAGTTCTCTA 4285 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG-TTAT 41867 |||| | || || || || || || || |||||||| || ||||||||| |||| Sbjct 4286 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTCTTTACAAAGATCTGCATGATTAT 4340 >seq149362 Length=6446 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| |||||| || ||| ||||||||||| || || | Sbjct 2426 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 2367 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || |||||||| || || || || || | ||| ||||| | |||| Sbjct 2366 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 2307 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | || || |||||| ||| | ||||| | ||| || | ||| || | |||| Sbjct 2306 ATGCCTTCTTTGTCC-TGAATCTTTGCCTTGACGTTATCA-ATTGTGTCTGAGCTTTCCA 2249 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || ||||| || |||| ||||| || ||||| ||||| Sbjct 2248 CTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| ||| || || ||||| ||||| | ||| || ||| | || || Sbjct 1496 ACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCATCCTCA 1437 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | |||||||||| ||||| | |||||||| | || Sbjct 1436 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGT-CTTG 1378 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | ||||||| || | | | |||||| ||| || ||||| | || || || Sbjct 1377 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCT---TTCAACCTCGAGGGTGATGGT 1321 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || |||||||| Sbjct 1320 CTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 >seq25063 Length=710 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| |||||||| ||||| ||||| | Sbjct 142 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 201 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| ||||| || || || | ||| ||||| | || Sbjct 202 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 261 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | |||||||||| ||| || ||||| | | || | |||| |||| || Sbjct 262 ATACCCTCCTTGTCCTGGATCTTAGCCTTCA-CATTGTCAATGGTGTCTGAGCTC---TC 317 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| ||||| || || |||||||| Sbjct 318 CACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 368 >seq210190 Length=6381 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||| || || || || ||||||||| || || ||||| | Sbjct 2987 GCCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCAGC 2928 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| | |||| ||||||||||| ||||| || || || | |||||| || | || Sbjct 2927 GAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGG 2868 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || |||| ||| | | | |||||| ||||| Sbjct 2867 GATGCCCTCCTTGTCC-TGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 2809 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || | || || || || || ||||| || || ||||||||| Sbjct 2808 CCTCGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATG 2759 >seq16096 Length=889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| || || | Sbjct 821 CCACCACGGAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCA 762 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | | || || |||||||| || |||||||| || | ||| ||||| | ||| Sbjct 761 AGAGTCCTCCCATCCTCAAGCTGCTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGG 702 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCA 41813 | || |||||| ||| ||| | || |||| || | || | || || | ||| | Sbjct 701 ATGCCCTCCTTATCC-TGAATCTTGGCTTTCACATTGTCA-ATCGTATCTGAACTCTCTA 644 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| || || || ||||| || || || || |||||||| Sbjct 643 CCTCCAATGTTATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||||||||| || ||||| | Sbjct 366 GCCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCAGC 307 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||| || || || || || || | ||| ||||| | || Sbjct 306 AAGAGTGCGACCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGG 247 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCC 41812 || || |||||||||| ||| | ||||| | || | | | ||| || || || Sbjct 246 AATGCCCTCCTTGTCC-TGAATCTTTGCCTTGAC-ATTATCAATTGTATCTGAACTTTCA 189 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || || || ||||| || || || |||||| Sbjct 188 ACCTCCAAGGTGATTGTCTTTCCGGTAAGGGTCTTGACAAAGATTTGCATG 138 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| |||||| || ||||||||| ||||| || || | Sbjct 2324 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 2383 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || ||||||||||| || || || || || | ||| ||||| | |||| Sbjct 2384 AGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 2443 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | || || |||||| ||| |||| || | || | | | ||| || | |||| Sbjct 2444 ATGCCTTCTTTGTCC-TGAATTTTCGCCTTGAC-ATTATCAATTGTGTCTGAGCTTTCCA 2501 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || ||||| || |||| ||||| || || || ||||| Sbjct 2502 CTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| || || ||| ||| || |||||||| ||||| | Sbjct 3007 GCCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGC 3066 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| |||||||||||||| || || ||||| | || ||||| | ||| Sbjct 3067 AAGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 3126 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | |||||||| | || | ||||| | || | | | |||||| ||| | Sbjct 3127 GATTCCCTCCTTGT-CTTGGATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCT---TT 3182 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| | || || || || || || || || || || || |||||||| Sbjct 3183 CAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 3234 >seq29583 Length=650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | |||||| || || || ||||| ||||| || ||||| | Sbjct 491 GCCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCAGC 432 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||||||||| || || || ||||| | || ||||| | ||| Sbjct 431 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 372 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || || ||||| | | || |||| |||| || | | | ||||| ||| | Sbjct 371 AATGCCTTCCTTAT-CTTGGATTTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---TT 316 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 315 CAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 264 >seq210616 Length=3554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || ||| |||||||| |||||| || || | || || | | | || |||||| Sbjct 3138 AGGTGAAGGGTGGACTCCTTCTAAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGC 3197 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || |||||||| || | || | ||||| || | || |||||||| ||||| | Sbjct 3198 TGCTTTCCAGCGAATATGAGCCTTTGCTTGTCCGGAGGGATGCCCTCCTTGT-CATGAAT 3256 Query 41777 TTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTTATCGTTTTAC 41834 || |||| || | || | ||| || | ||| ||||||| ||||| || || | Sbjct 3257 CTTAGCTTTCACATTGTCA-ATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTC 3315 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || ||||| Sbjct 3316 CTGTCAAAGTTTTGACAAAGATTTGCAT 3343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461061419308800