Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12378 138 2e-27 seq46090 102 2e-16 seq128065 100 6e-16 seq122441 100 6e-16 seq76604 100 6e-16 seq154939 98.7 2e-15 seq136545 98.7 2e-15 seq113209 98.7 2e-15 seq72165 98.7 2e-15 seq48032 98.7 2e-15 seq121096 96.9 7e-15 seq64942 96.9 7e-15 seq33006 96.9 7e-15 seq21718 96.9 7e-15 seq14366 96.9 7e-15 seq95812 93.3 9e-14 seq170407 91.5 3e-13 seq96083 89.7 1e-12 seq81526 89.7 1e-12 seq69547 89.7 1e-12 >seq12378 Length=999 Score = 138 bits (152), Expect = 2e-27 Identities = 344/510 (67%), Gaps = 17/510 (3%) Strand=Plus/Plus Query 230128 AACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC-CTGGTAAATCGTTTGCCGAGCGTCT 230186 || ||||| ||||||| | ||||||| | || || | | | | ||||| ||||| | Sbjct 34 AAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAGA-CTTTTGCGGAGCGGAT 92 Query 230187 CGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTG 230246 ||| |||| | || || ||||| || | || || || || |||||||| || ||||| Sbjct 93 CGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTG 152 Query 230247 GCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTC 230302 ||| || |||| | ||||||| || || | || |||||||| ||| | Sbjct 153 GCT----AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGC 208 Query 230303 GCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCTCCAGAACAAG 230361 | || || || ||||| | |||| || || || | || || |||| || ||| Sbjct 209 GAGATGAAGGGCTCCACTGCGACTTCG-CGTGCCTTCTCTACTCCCTCCTCCGGATGAAG 267 Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAA-GCAGTTGAAAACGAAAAGGAGTT 230420 || | ||| || || |||| | | ||| || ||||| | || | |||||| Sbjct 268 CTCACCGAGGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGACATAGAGAGGGAGTT 326 Query 230421 CATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGT 230479 | | || ||||| | || || ||||||| |||| ||||||| ||| || ||||| |||| Sbjct 327 CGTCTGCGACGCGTTACCGTG-CGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGT 385 Query 230480 ACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACT 230539 ||||||| ||||| || || | | | | ||| | || || | |||| |||| | Sbjct 386 ACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATG 445 Query 230540 CTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCG 230599 ||||||| |||| | |||||||| ||| ||||| ||||||||||| ||||| | Sbjct 446 TGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCAATTTCTTTG 505 Query 230600 AAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 | ||| | || | || || ||| |||||| Sbjct 506 AGAAGAGAGTTGGGGAGTACCAGAAGGCCT 535 >seq46090 Length=505 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 131 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 72 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 71 GCCCCACGGTGGGC 58 >seq128065 Length=761 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 315 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 256 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 255 CCCCACGGTGGGC 243 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 761 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 702 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 701 CCCACGGTGGGC 690 >seq122441 Length=3021 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 2480 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2539 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2540 CCCCACGGTGGGC 2552 >seq76604 Length=374 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 76 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 16 CCCCACGGTGGGC 4 >seq154939 Length=659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 659 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 600 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 599 CCCACGGTGGGC 588 >seq136545 Length=1034 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 74 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14 CCCACGGTGGGC 3 >seq113209 Length=7640 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1384 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1443 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1444 CCCACGGTGGGC 1455 >seq72165 Length=388 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 75 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15 CCCACGGTGGGC 4 >seq48032 Length=493 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 72 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12 CCCACGGTGGGC 1 >seq121096 Length=984 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 71 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 11 CCCACGGTGGG 1 >seq64942 Length=413 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 61 CCACGGTGGGC 71 >seq33006 Length=609 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 61 CCACGGTGGGC 71 >seq21718 Length=763 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 693 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 752 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 753 CCCACGGTGGG 763 >seq14366 Length=933 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 61 CCACGGTGGGC 71 >seq95812 Length=329 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 68 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9 Query 165770 CCCACG 165775 |||||| Sbjct 8 CCCACG 3 >seq170407 Length=1546 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1487 TGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1428 Query 165769 CCCCACGATG 165778 ||||||| || Sbjct 1427 CCCCACGGTG 1418 >seq96083 Length=328 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 3 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 62 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 63 CCCTCGGTGGGC 74 >seq81526 Length=361 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 75 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 16 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 15 CCCTCGGTGGGC 4 >seq69547 Length=396 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 1 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 60 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 61 CCCTCGGTGGGC 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054967220671400