Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq155400 111 1e-19 seq58964 93.3 4e-14 seq171660 86.0 5e-12 seq48558 86.0 5e-12 >seq155400 Length=901 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||| ||||| |||||||| ||||| ||||||||| Sbjct 595 GACAAAGAAGGCATCCCTCCAGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAA 536 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| | || |||||||| || || ||||| || ||||||||| ||||||| Sbjct 535 GATGGCAGAACTCTTGCGGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTT 477 >seq58964 Length=436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | ||| ||| ||| || |||||||| | ||| ||| || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || || || || || || || || |||| |||||||| Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||| || || ||||| || ||||| | || |||| || ||| Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 100 >seq171660 Length=1062 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || || || |||||||| |||||||| || || ||| | || | ||||| Sbjct 537 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 596 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||| || ||||| |||||||||||| ||||| Sbjct 597 TTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTG 633 >seq48558 Length=489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||| || || |||||||||||||| || || || || || Sbjct 220 GATAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 279 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| | | |||| || |||||||| || ||||||||||| |||||| ||||| Sbjct 280 GATGGCCGCGCCCTGGCTGACTACAATATCCAAAAGGAATCTACCCTTCACCTGGTG 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427235655680900