Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq58964 89.7 4e-13 seq171660 86.0 5e-12 seq48558 86.0 5e-12 seq2159 86.0 5e-12 >seq58964 Length=436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | ||||| ||| ||| || |||||||| | ||| ||| || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| || || || | || || || || |||| |||||||| Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| || || || ||||| || ||||| | || |||| || ||| Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 100 >seq171660 Length=1062 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || || |||||||| |||||||| | || ||| | || | ||||| Sbjct 537 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 596 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||| |||||||| |||||||||||| ||||| Sbjct 597 TTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTG 633 >seq48558 Length=489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| || || |||||||||||||| || || || | || Sbjct 220 GATAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 279 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| | | |||| || |||||||| |||||||||||||| |||||| ||||| Sbjct 280 GATGGCCGCGCCCTGGCTGACTACAATATCCAAAAGGAATCTACCCTTCACCTGGTG 336 >seq2159 Length=1969 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||||| ||| | || ||||| || || ||||||||| Sbjct 1538 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 1479 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || |||||||| || |||||||| || ||||||||| | || ||| Sbjct 1478 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 1419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409741511802920