Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq59837 141 1e-28 seq7966 131 3e-25 seq13283 122 1e-22 seq58964 118 2e-21 seq186836 113 7e-20 seq6123 98.7 1e-15 seq200298 91.5 2e-13 seq171660 91.5 2e-13 seq115535 91.5 2e-13 seq2159 89.7 8e-13 seq117973 86.0 9e-12 >seq59837 Length=433 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | ||||| |||||||| ||| | || | ||| || Sbjct 106 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 165 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || ||| ||||| || |||||||| || || || || | Sbjct 166 A-GACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 224 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | |||||| || | ||| | | |||||| | Sbjct 225 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACA 284 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || |||||| |||||||||| | ||| |||| ||||| || Sbjct 285 ACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 336 >seq7966 Length=1209 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| | Sbjct 1096 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 1037 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | ||| |||||||| ||||| || ||||| || || || || Sbjct 1036 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 977 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | |||||| | | ||| | | ||| |||||| Sbjct 976 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 917 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| ||||| | ||| | || |||||||| Sbjct 916 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 867 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || ||||| ||||||||||| ||||| |||||||| |||| || | | || || Sbjct 1207 CAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCGGACTAC 1148 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||||||| | || ||||| || ||| | || ||||| || Sbjct 1147 AATATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCAT 1095 >seq13283 Length=967 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || | | | || | ||| | Sbjct 799 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCATTGTGGAAGTGGAAAGCTCT 740 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||||||||| || || ||||| || || || || Sbjct 739 GACACCATTGATAATGTGAAAGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 680 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | |||||| | | ||| | | || |||||| Sbjct 679 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 620 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| ||||| | ||| | || ||||||| Sbjct 619 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCAGTGGTAT 570 Score = 104 bits (114), Expect = 4e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || ||||| || || || || || || || || || Sbjct 967 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 908 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| |||||| |||||||| ||| || | | |||||| || Sbjct 907 CAGAGGCTCATTTTTGCAGGGAAACAACTAGAGGATGGTCACACTCTTGCAGATTACAAC 848 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || | ||||||||| | || ||||| || ||| | || ||||| || Sbjct 847 ATCCAGACGGAATCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGCAT 798 >seq58964 Length=436 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | || || ||||| || ||| | || | ||| || Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| ||| | || || ||||| || |||||||| || || || || | Sbjct 268 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 210 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | ||||| | | ||| | | |||||| | Sbjct 209 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 150 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || ||| |||||||||| | ||| |||| ||||| || Sbjct 149 ACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 98 >seq186836 Length=3669 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| | ||| | ||||| | || ||||| || || || | ||| | || ||| Sbjct 688 ATGCAGGTTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTAGAGAGCTC- 630 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||||||||| || ||||| || || ||||| Sbjct 629 TGATACCATTGACAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATCCCGCCGGATCA 570 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || ||||| || || |||||| |||| || || | |||||||| Sbjct 569 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 510 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || || |||| | ||| | ||| | || |||||| Sbjct 509 TATCCAGAAAGAGTCCACCCTGCACCTTGTTCTGCGTCTCCGTGGTGGT 461 >seq6123 Length=1345 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 755 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 814 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| |||||||| ||||| || || || || || Sbjct 815 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 874 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| ||||| || | |||||| | || || | | || || ||| Sbjct 875 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGATGGACGCACCCTTGCTGACTACAAT 934 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | || |||| Sbjct 935 ATTCAAAAGGAATCGACTCTACACCTGGT 963 >seq200298 Length=1237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || || ||||| || || || |||||||| || || || | Sbjct 730 TTCAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 671 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 | || ||| ||||||| | | |||||||||||| |||||||| |||||| Sbjct 670 TGGAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACT 621 >seq171660 Length=1062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| || || || | ||| ||||| | Sbjct 196 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 255 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| || || || || || || || ||| Sbjct 256 GACACTATTGACAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAA 315 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | ||||| | || ||| | | || || || Sbjct 316 CAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGGCGGACACTCGCTGACTACAAC 375 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || |||||||| || ||| | || |||||| Sbjct 376 ATCCAAAAAGAGTCCACTCTCCACTTGGTT 405 >seq115535 Length=1238 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || ||| Sbjct 597 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAGAGCTC- 655 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | || || || || || || |||||||| || || || || Sbjct 656 TGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 715 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || |||||||| || ||| | |||||| |||| || | | ||||| || Sbjct 716 GCAGAGGTTGATCTTTGCAGGGAAGCAACTCGAGGATGGTCGTACCCTGGCTGATTACAA 775 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || || || |||||||||||||| | ||| | || |||||| Sbjct 776 CATCCAGAAGGAGTCGACTTTGCATTTGGTCCTCCGTCTCCGGGGTGGT 824 >seq2159 Length=1969 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 1543 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 1484 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | |||| | | |||||| || || ||||| || |||||| | || | | Sbjct 1483 TGGAAGATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAG 1424 Query 124747 TTTTACGTTTACGAGGTGG 124765 ||||| | || | ||||| Sbjct 1423 TTTTAAGGTTGAGGGGTGG 1405 >seq117973 Length=1091 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| ||||| || | ||| ||||| | Sbjct 477 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 536 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| || || || || || || || || Sbjct 537 GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 596 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | ||||| | |||||| | | || || || Sbjct 597 CAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAAC 656 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||| || || Sbjct 657 ATTCAAAAAGAGTCCAC 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753465562304000