Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq153096 104 3e-17 seq1224 104 3e-17 seq2159 100 4e-16 seq6123 93.3 6e-14 seq200298 91.5 2e-13 seq155400 91.5 2e-13 >seq153096 Length=4879 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| || || || ||||| ||||| | | Sbjct 3442 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 3383 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| || ||||| |||||||| || ||||||||||| || Sbjct 3382 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 3323 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 3322 ATCCCTTCCTTATCCTG 3306 >seq1224 Length=2434 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||||| || || ||||| ||||| | | Sbjct 1902 CCACCACGAAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 1961 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| || Sbjct 1962 AGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 2021 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 2022 ATCCCTTCCTTATCCTG 2038 >seq2159 Length=1969 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || | ||||| || | || | ||| || || || || || |||||| Sbjct 1402 GTTCCACCCCTCAACCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 1461 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 1462 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 1521 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 1522 GGGATGCCTTCCTTATCCTG 1541 >seq6123 Length=1345 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| |||| ||| ||||| ||| || ||||| || || | Sbjct 981 CCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 923 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || |||||||||||||||| ||||||||| || || || Sbjct 922 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 863 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 862 AATGCCTTCCTTATCTTG 845 >seq200298 Length=1237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 589 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 648 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| ||| Sbjct 649 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 708 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 709 GGGATGCCTTCCTTGTCCTG 728 >seq155400 Length=901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | ||| || || || || || ||||| Sbjct 459 GTTCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCC 518 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||||| ||| || | ||| || |||||||| |||| ||| || ||||| ||| Sbjct 519 GCAAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGA 578 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 579 GGGATGCCTTCTTTGTCCTG 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741567393817600