Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq155400 118 8e-22 seq171660 98.7 8e-16 seq117973 95.1 9e-15 seq58964 87.8 1e-12 seq2159 84.2 2e-11 >seq155400 Length=901 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| || || || ||||| |||||||| || || Sbjct 461 TCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGC 520 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| ||||| |||||||| || Sbjct 521 AAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGG 580 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || | | |||| ||| | | | || |||| | |||| Sbjct 581 GATGCCTTCTTTGTCCTGGATCT-TGGCTTTGACATTGTCGATGGTATCACTGCTCTCGA 639 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||||| | || ||||||| ||||| || ||||||||||| || Sbjct 640 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 691 >seq171660 Length=1062 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| ||| || || || |||||||| ||||||||||| || Sbjct 422 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 363 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | || || | || ||||| ||| |||| || |||||||| ||| ||| Sbjct 362 AGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 303 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||| ||||| | ||| ||||||| | || Sbjct 302 ATTCCCTCCTTGTCTTGGATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAAC 244 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || | ||||| ||||| || ||||| Sbjct 243 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || |||| ||| | |||||||| ||||||||||||||||| || Sbjct 879 TCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGC 820 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 819 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 760 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 759 AATACCCTCCTTGTC 745 >seq117973 Length=1091 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || |||||||||||||||||||| || Sbjct 703 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 644 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | || || | || ||||| ||| |||| || ||||| || || ||| Sbjct 643 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 584 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | |||||| | ||| ||||||| | || Sbjct 583 ATTCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACC 524 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 || | |||||| | ||||| || | ||||| ||||| || ||||| | | ||| Sbjct 523 TCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTAAC 469 >seq58964 Length=436 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| || || || || ||||| ||||||||||| || ||| Sbjct 101 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 160 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | || || | || || || ||| |||| || || || || || ||| Sbjct 161 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 220 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || ||| | | |||||| | ||| ||||| | || | Sbjct 221 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 280 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| |||||||| || || ||||||||||||||| Sbjct 281 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 >seq2159 Length=1969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| ||||| || ||||| |||||||| || || | ||| | | |||||||||||| Sbjct 1428 GTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGCAAGAGTTCTTCCATCTTCCAATTG 1487 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || || ||| | || | ||| |||||||| || | |||||||||||| Sbjct 1488 CTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTATC 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378369510311100