Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12378 116 3e-21 seq115535 114 1e-20 seq6123 104 2e-17 seq58964 102 7e-17 seq155400 98.7 9e-16 seq117973 98.7 9e-16 seq153096 96.9 3e-15 seq192635 95.1 1e-14 seq115308 95.1 1e-14 seq150930 93.3 4e-14 seq171660 86.0 6e-12 >seq12378 Length=999 Score = 116 bits (128), Expect = 3e-21 Identities = 164/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 57910 TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG 57969 |||| || ||||| ||||| | | |||||||| | || | ||| || || || | Sbjct 29 TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGACTTTTGCGG 85 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCA 58028 || || | | || |||||| ||| ||||| || ||||| ||||| ||||| |||| | Sbjct 86 AGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCG-CG 144 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 ||||||||| | || || ||||| ||||||| || ||||| || ||||||||||| Sbjct 145 ATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATC 204 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||| || || || ||||| || || |||||||| | ||||| Sbjct 205 TCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGCCTTCTCTACTC 251 >seq115535 Length=1238 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| || || || || ||||| || |||||| |||| || || Sbjct 365 AATCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACTATCACCCTCGAGGTCGAGAG 424 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || ||||||||| ||| | || ||||| Sbjct 425 CTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGA 484 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || |||||||| || || ||| | || ||| |||| || ||| || Sbjct 485 CCAGCAGAGGCTCATATTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCCGACTA 544 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || |||||||| || ||||| || | || ||||| |||| Sbjct 545 CAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGTGGTA 597 >seq6123 Length=1345 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 755 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 814 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| || ||||||||| | || || |||||| Sbjct 815 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 874 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 875 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 933 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||||||||| || ||||| || ||||| Sbjct 934 TATTCAAAAGGAATCGACTCTACACCTGGTGCTCAGACT 972 >seq58964 Length=436 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| || Sbjct 327 ATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTCA 268 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||| |||||| | || || ||||| Sbjct 267 GACACAATTGATAACGTCAAGGCAAAG-ATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | || ||| | ||| || ||||| || Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 149 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| |||||||| ||| |||| || Sbjct 148 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCT 116 >seq155400 Length=901 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA--C 31247 || |||||||||||||| || |||||||| || || || ||||| | || || || | Sbjct 691 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 632 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || || | |||| | |||||| | || |||||| |||||| | || || | Sbjct 631 AGT--GATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAG 574 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || ||| | || || || |||||||| || ||||||| | ||| | |||| Sbjct 573 ATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATT 514 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| ||||| || ||||||||||| ||||| | || || ||||| || Sbjct 513 ACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGG 462 >seq117973 Length=1091 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || |||||| |||| |||||| || Sbjct 477 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 536 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||| || | || || ||||| Sbjct 537 GACACTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 595 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTAT 31369 ||| | || || || |||||||| ||| | || ||| | | ||| || || || Sbjct 596 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACT-TGCT-GACTAC 653 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| || || || || ||||| |||||||| Sbjct 654 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 694 >seq153096 Length=4879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 31180 AATTGAATC--AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTC 31237 |||| |||| || ||||||||||||||| || || || || ||||| || |||||| || Sbjct 2973 AATTCAATCCCAATCATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTC 3032 Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297 || || || ||||||| |||| | ||||| | || ||||||||| || Sbjct 3033 GAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGA 3092 Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357 | || || ||||||||| | | || ||||| || || |||||||| || ||| Sbjct 3093 ATTCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACT 3152 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || |||||| || || || || || || || || ||| |||| || Sbjct 3153 TTGGCCGATTACAATATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 3199 >seq192635 Length=3999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || || | Sbjct 1650 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCC 1709 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||| ||| | ||||| ||| Sbjct 1710 TCCGACACCATCGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCGCCGGAC 1769 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| |||| | ||| || Sbjct 1770 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTAC 1829 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 1830 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 1864 >seq115308 Length=3903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| || || || || ||||| || |||||| |||| || || Sbjct 3794 AACCATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAG 3735 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || ||||||||| ||| | || || || Sbjct 3734 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 3675 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || ||||| ||||| |||||||| || ||| | ||||| Sbjct 3674 CCAGCAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTA 3615 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || || || || || || || || || ||| Sbjct 3614 TAACATCCAGAAGGAGTCTACACTCCACCTTGTCCTT 3578 >seq150930 Length=8867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || || | || Sbjct 454 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 513 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 514 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGAATCCCCCCGGACCA 572 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || ||| | ||||| || Sbjct 573 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAA 632 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || ||| |||| ||| | ||| | || |||| Sbjct 633 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 682 >seq171660 Length=1062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || || || || |||||| | || || ||| ||| Sbjct 652 ATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTCC 711 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| || | || || || ||| Sbjct 712 GATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 771 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||||||||| ||| | ||| | || || ||| Sbjct 772 CAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAAC 831 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | || |||| || ||||| | || || Sbjct 832 ATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444591916977600