Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq153096 107 1e-18 seq155400 105 5e-18 seq150930 89.7 4e-13 seq1224 89.7 4e-13 >seq153096 Length=4879 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||||| ||| || || | || || Sbjct 3197 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 3138 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||| | ||| || || | || | || || || || Sbjct 3137 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 3078 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || | | |||||| ||| |||||| || | || || || | Sbjct 3077 GATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCGACCTCGAGGGTGATGGTCT 3019 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| |||||||| ||||||||||| Sbjct 3018 TGCCGGTTAGGGTTTTCACGAAAATTTGCAT 2988 >seq155400 Length=901 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||||| || | ||| ||||||||| | |||||||| | Sbjct 462 CCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 521 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| ||| ||||| ||||| |||| || ||||||||| | || Sbjct 522 AGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGG 581 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| || | | || || | |||||| Sbjct 582 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGACC 641 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| ||||||||||| ||||||||||| || || Sbjct 642 TCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATTGTT 694 >seq150930 Length=8867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||||| || |||||| || | ||||||||| | Sbjct 680 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 621 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||| ||||| |||| ||||| || || | || Sbjct 620 AGGGTCCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 561 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | || || || ||| ||||| || ||| || Sbjct 560 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 502 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 501 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 454 >seq1224 Length=2434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | || |||||| || | ||||||||||| || || | |||| || Sbjct 2147 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 2206 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||||| ||| ||||| | || | || || || || Sbjct 2207 CAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTG 2266 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| |||||| ||| |||||| || | || || || | Sbjct 2267 GATCTTAGCCTTGACGTTGTCAATCGTGTCG-GAGCTCTCGACCTCGAGAGTGATGGTCT 2325 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| || || ||||| || || ||||| Sbjct 2326 TTCCGGTAAGGGTCTTCACGAAGATCTGCAT 2356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380389906785240