Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq155400 98.7 1e-15 seq58964 98.7 1e-15 seq59837 86.0 6e-12 >seq155400 Length=901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| ||||||||||| | || || ||||| ||||| Sbjct 486 TGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATCTTCCAGTTGC 545 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| | || ||||| ||||| |||||||||||||| || || Sbjct 546 TTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTG 605 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | || || || || || |||| ||| | ||||| |||||| Sbjct 606 GCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTC 665 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||| ||||| ||||||||| Sbjct 666 AGAGTTTTCACGAAAATTTGCATA 689 >seq58964 Length=436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | || || ||||| || ||||||||||| | Sbjct 101 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 160 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||| || || || || || ||| |||| || | ||||| || || || Sbjct 161 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 220 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 221 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 280 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || |||||||| || || || || |||||||| Sbjct 281 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq59837 Length=433 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | || || || || |||||||||||||| | Sbjct 333 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 274 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || || || || || ||| |||| || | ||||| || || || Sbjct 273 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 214 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 213 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 154 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| || || || || |||||||| Sbjct 153 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505678543809600