Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq155400 114 9e-21 seq7966 98.7 7e-16 seq6123 93.3 3e-14 seq153096 89.7 4e-13 seq58964 87.8 1e-12 >seq155400 Length=901 Score = 114 bits (126), Expect = 9e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||||||||| ||| |||| | ||||| | ||| Sbjct 486 TGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATCTTCCAGTTGC 545 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | ||||| || || || ||||||||||| || ||| Sbjct 546 TTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTG 605 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || |||||||| || | || || || | || ||||| || || ||| Sbjct 606 GCTTTGACATTGTCGATGGTATCACTGCTCTCGACCTCAATAGTGATGGTCTTCCCGGTC 665 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| || |||||||||||||| Sbjct 666 AGAGTTTTCACGAAAATTTGCATATT 691 >seq7966 Length=1209 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 666 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 725 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| |||| | | || ||||| || || || || || || ||| ||| Sbjct 726 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 785 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 786 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 845 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 846 AGAGTTTTGACAAAGATCTGCATA 869 >seq6123 Length=1345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||||||||| || ||||| ||||||||||| || | | | || || Sbjct 1191 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 1132 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| ||| || || ||||| || | Sbjct 1131 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 1072 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || ||||| || | | || || || ||||| |||||||| Sbjct 1071 ATCTTTGC-CTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 1013 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 1012 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 983 >seq153096 Length=4879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || || || || ||||||||| | | ||| | || || Sbjct 3196 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTCC 3137 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | ||||| | || ||||| |||||||| || ||||| Sbjct 3136 AACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 3077 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| ||| | || || || | ||| ||||| || Sbjct 3076 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTG 3017 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||||||||| Sbjct 3016 CCGGTTAGGGTTTTCACGAAAATTTGCAT 2988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||||||||| || | | |||| || Sbjct 3652 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 3593 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | ||| ||||| ||| || ||||| || || Sbjct 3592 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 3533 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || |||||||| | || || || || || ||||| || Sbjct 3532 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 3473 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || |||||||| ||||| Sbjct 3472 CCTGTCAAAGTCTTCACAAAAATCTGCAT 3444 >seq58964 Length=436 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 119 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 178 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | || | | || ||||| ||||| ||||||||||| | Sbjct 179 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 238 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || || || || |||| || || || ||||||||||| Sbjct 239 ATCTTTGC-CTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 297 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || |||||||||||||| Sbjct 298 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248804643980