Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq155400 107 2e-18 seq171660 93.3 3e-14 seq1224 89.7 4e-13 seq200298 87.8 1e-12 seq194486 87.8 1e-12 seq13283 87.8 1e-12 seq7966 87.8 1e-12 seq153096 86.0 5e-12 seq117973 86.0 5e-12 seq58964 82.4 6e-11 >seq155400 Length=901 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| ||||||| ||| | || ||||||||||| || |||||||||| Sbjct 460 TTCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCG 519 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || ||||| || || || ||| | || |||||||| ||||| | Sbjct 520 CAAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAG 579 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| |||||||| || || ||| || | | ||| ||||| | ||| Sbjct 580 GGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGA 639 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || ||||| || || || | |||||| || ||||||||||| || Sbjct 640 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 691 >seq171660 Length=1062 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | |||||||||||||| ||||||||||| | Sbjct 652 TTCCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGG 593 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| |||||||| || ||| | || || ||||||||||| || Sbjct 592 CAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGG 533 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| || || || || | ||| ||||| | ||| Sbjct 532 GTATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAA 473 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 472 CCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCAT 424 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 860 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 801 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 800 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 745 >seq1224 Length=2434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||||||||| |||| || || ||||||| Sbjct 2147 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 2206 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||| ||||| || | || | ||||||||||||| ||| | ||||| ||||| Sbjct 2207 CAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTGTC 2263 >seq200298 Length=1237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| ||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 590 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 649 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | || |||| ||| ||||| ||| |||| |||||||||||||| | Sbjct 650 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAG 709 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 710 GGATGCCTTCCTTGTC 725 >seq194486 Length=5478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| || | || | |||||| || || ||||||||||| |||||||| | Sbjct 4846 TTCCTCCACGCAGCCGGAGAACAA-GTGCAATGTTGATTCCTTTTGAATGTTGTAATCTG 4788 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | | ||||||| ||||||||| ||| | || || ||||||||||| Sbjct 4787 CAAGAGTTCTTCCATCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATC 4733 >seq13283 Length=967 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 590 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTC 649 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| | |||||||| || ||| | ||||| ||||| Sbjct 650 AAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 709 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| || | ||||| Sbjct 710 AATTTTAGCTTTCACATTATCAATGGT---GTCAGAGCTTTCCACTTCCACAATGATGGT 766 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 767 TTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 799 >seq7966 Length=1209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 887 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCCTC 946 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || ||| | ||||| || || Sbjct 947 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 1006 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 1007 AATTTTAGCTTTCACATTATCTATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 1063 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 1064 TTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 1096 >seq153096 Length=4879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||| || ||||||||||| |||| ||| | | ||||| Sbjct 3197 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 3138 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| ||||| || | || | |||||||| ||| ||| | ||||| ||||| Sbjct 3137 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 3078 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| ||| |||| ||| ||||| || Sbjct 3077 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTT 3018 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||||| || ||||||||||| Sbjct 3017 GCCGGTTAGGGTTTTCACGAAAATTTGCAT 2988 >seq117973 Length=1091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||| ||||| ||||||||||| || | ||| | | ||||| Sbjct 914 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGTGTACGGCCATCCTC 855 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 854 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTG 795 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | ||| || || ||| || | || ||||| || Sbjct 794 AATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCTCAACCTCCAATGTGATGGTCTT 735 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | ||| |||||||| || ||||| Sbjct 734 CCCTGTGAGAGTCTTGACAAAGATCTGCAT 705 >seq58964 Length=436 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| ||||| ||||||||||| ||||| || || | ||| | |||||||| Sbjct 347 ACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 406 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGC 18922 | ||||||||| ||| | || || |||||| Sbjct 407 AACTGTTTACCTGCAAAGATGAGCCTCTGC 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413507811707320