Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq153096 89.7 3e-13 seq58964 86.0 4e-12 >seq153096 Length=4879 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--TG--GT 33215 ||||||||||| |||||||| || || ||||||||||| | ||| |||| || | Sbjct 3425 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCG-CAA---GAGTCCTGCCAT 3370 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 | ||||||||||| ||| || || || | ||||| |||| || || ||||| || | Sbjct 3369 CCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTAT 3310 Query 33276 C---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | | | | ||| || || | | |||||||||| | | ||| || ||||| | Sbjct 3309 CCTGGATCTTGGCC---TTGACGTTATCAATCGTGTCGGAGCTCTCAACTTCGAGAGTGA 3253 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || ||||| || ||||| |||||||| Sbjct 3252 TTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 3216 >seq58964 Length=436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCA 33217 ||||||||||| ||||||||||| || || |||||||| | | | || || ||| Sbjct 118 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC--AGTGTCCTGCCGTCC 175 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || | |||||||| ||| || | | |||||||| | ||| ||||||||||| || Sbjct 176 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 235 Query 33278 CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 |||| ||| || || | | ||| ||||| | || || |||| ||| || Sbjct 236 TGAATCTTTGCC---TTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATG 292 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || || ||||||||||| Sbjct 293 GTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317958698200440