Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq186836 107 1e-18 seq58964 98.7 7e-16 seq13283 91.5 1e-13 seq7966 91.5 1e-13 seq1224 89.7 4e-13 seq59837 84.2 2e-11 >seq186836 Length=3669 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| |||||| || |||||||||||| || ||| |||| ||||| || Sbjct 486 TGCAGGGTGGACTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGC 545 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || ||||||| |||||| ||| | || | ||| || |||||| ||| || Sbjct 546 TTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTG 605 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 |||||| | ||| ||||| | ||| || |||| || || || || || || Sbjct 606 GCTTTGACATTGTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCCAGTC 665 Query 44099 AAAGTCTTCACAAATATTTGCATG 44122 |||||||||||||| | |||||| Sbjct 666 AAAGTCTTCACAAAAACCTGCATG 689 >seq58964 Length=436 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || |||||| ||||| || ||||| | | || | || | || Sbjct 118 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC-TGCCAGTGTC-CTGCCGTCC 175 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 176 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 235 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 236 TGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTT 295 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| |||||||| Sbjct 296 TTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 327 >seq13283 Length=967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || || || | | |||| | Sbjct 590 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-AGCAAGTGTCCTTCCATCCT 648 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || || ||| Sbjct 649 CAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTT 708 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || ||| || || | ||||| || || | || |||| Sbjct 709 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTT 768 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 769 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 800 >seq7966 Length=1209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || | || || | | |||| | Sbjct 887 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 945 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || ||||| Sbjct 946 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCT 1005 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || | | || || | ||||| || | || || |||| Sbjct 1006 GAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 1065 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 1066 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 1097 >seq1224 Length=2434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| || || ||||| ||||| | ||| |||| || Sbjct 1692 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1751 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || |||||||| ||||||| ||||||||| | || | |||||| ||||| Sbjct 1752 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1811 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | ||||| | |||||| || | || || || || Sbjct 1812 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1871 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 1872 CCTGTCAAAGTCTTCACAAAGATCTGCAT 1900 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || || ||| || || ||||| ||||| | | | || |||| | Sbjct 1919 CACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGC-CATCCT 1977 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||||||| ||||| || || ||||||| ||||| ||| | || | ||||| ||||| Sbjct 1978 CCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCT 2037 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || ||||| || ||| ||||| | ||| || || | ||||| || | Sbjct 2038 GGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTCT 2097 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || ||||||||||| ||||| ||||| Sbjct 2098 TCCCTGTCAAAGTCTTCACGAATATCTGCAT 2128 >seq59837 Length=433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || ||| || || || || ||||| | | || | || |||| Sbjct 316 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC-TGCCAGTGTC-CTACCATCC 259 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 258 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 199 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 198 TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 139 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| |||||||| Sbjct 138 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353866218475440