Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq155400 104 2e-17 seq58964 96.9 3e-15 seq200298 84.2 2e-11 >seq155400 Length=901 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | | ||||||||||| || || || || || ||||| ||||||||||| Sbjct 460 TTCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCG 519 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | |||| | |||||||| ||| ||||| ||| | || || ||||||||||| | Sbjct 520 CAAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAG 579 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| || || ||| || | | | | | ||| | || Sbjct 580 GGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTGCTCTCGA 639 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | || ||||| || ||||||| ||||| || ||||||||||| || Sbjct 640 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 691 >seq58964 Length=436 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || || ||||| || ||||||||||| ||| || | || || Sbjct 118 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 177 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | || |||||||| || || ||| | |||||||||||| Sbjct 178 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 237 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| || || | ||| | || |||| ||||| ||||||||||| Sbjct 238 AATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 297 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||||||| || || ||||||||||||||| Sbjct 298 CCCGGTCAAAGTCTTCACAAAAATTTGCATT 328 >seq200298 Length=1237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || |||||| ||||||| | ||||||||||| | || || || || |||||||| || Sbjct 580 TTAATCATTGTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATA 639 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | ||| | ||||||||| || || || ||| |||| || ||||| Sbjct 640 TTATAATCTGCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGC 699 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 700 TGATCTGGAGGGATGCCTTCCTTGTC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418509330309180