Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq119013 105 3e-18 seq149885 104 1e-17 seq18607 104 1e-17 seq182840 102 4e-17 seq157849 102 4e-17 seq42402 100 1e-16 seq161546 98.7 5e-16 seq68236 98.7 5e-16 seq151550 96.9 2e-15 seq92180 96.9 2e-15 seq208391 95.1 6e-15 seq121468 95.1 6e-15 seq13139 93.3 2e-14 seq120511 89.7 3e-13 seq29141 87.8 9e-13 >seq119013 Length=1525 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 86 AATAGAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 28 Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| |||| |||||||||| || Sbjct 27 GACGCTCTAACCAGCTGAGCTAATAGG 1 >seq149885 Length=1835 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1835 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1776 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 1775 CTGAGCTAATAGGCCG 1760 >seq18607 Length=823 Score = 104 bits (114), Expect = 1e-17 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||||| ||| || | | | |||||||| ||||||||||||||||||||| Sbjct 347 AATAGAAAAACAAAT-GGCTCACGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 405 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGAT 11544 |||||||| |||| |||||||||| |||| || || | |||||| Sbjct 406 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTTGATGCCTGTGAT 450 >seq182840 Length=711 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 150 AAAAAAACAC--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 207 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 208 GCTCTAACCAGCTGAGCTAATAGGCCG 234 >seq157849 Length=7645 Score = 102 bits (112), Expect = 4e-17 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 2487 AATAAAAAAACA---TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 2431 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 2430 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 2400 >seq42402 Length=529 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 529 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 470 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 469 TGAGCTAATAGGCC 456 >seq161546 Length=1645 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 |||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| || Sbjct 1645 GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCT 1586 Query 11517 GAGCTAATGGGCC--GTCGACGATT 11539 |||||||| |||| || ||| ||| Sbjct 1585 GAGCTAATAGGCCATGTTGACAATT 1561 >seq68236 Length=401 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 62 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 119 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 120 CTCTAACCAGCTGAGCTAATAGGCC 144 >seq151550 Length=2525 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517 ||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| ||| Sbjct 2525 GCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTG 2466 Query 11518 AGCTAATGGGCC 11529 ||||||| |||| Sbjct 2465 AGCTAATAGGCC 2454 >seq92180 Length=336 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517 ||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| ||| Sbjct 336 GCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTG 277 Query 11518 AGCTAATGGGCC-GTCGACGATTGTGA 11543 ||||||| |||| | || || ||||| Sbjct 276 AGCTAATAGGCCACTTGATGACTGTGA 250 >seq208391 Length=2512 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 675 AAAACAAAAAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 616 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 615 GCTCTAACCAGCTGAGCTAATAGGCC 590 >seq121468 Length=4097 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| || || ||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 3523 TTAAAAATTAAAAAAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGC 3464 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 3463 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 3433 >seq13139 Length=972 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 971 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 912 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 911 TGAGCTAATAGGCCG 897 >seq120511 Length=1351 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 1279 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1338 Query 11516 TGAGCTAATGGGC 11528 ||||||||| ||| Sbjct 1339 TGAGCTAATAGGC 1351 >seq29141 Length=652 Score = 87.8 bits (96), Expect = 9e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 72 AAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13 Query 11512 CAACTGAGCTAA 11523 || ||||||||| Sbjct 12 CAGCTGAGCTAA 1 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260819460159280