Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq161483 187 4e-43 seq125868 152 8e-33 seq56020 152 8e-33 seq19596 152 8e-33 seq176237 131 3e-26 seq121387 116 6e-22 seq75664 98.7 2e-16 >seq161483 Length=5526 Score = 187 bits (206), Expect = 4e-43 Identities = 208/275 (76%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || |||||||| || ||||||||||| || | Sbjct 4330 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCCA 4272 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||||||||| |||||||||||| |||| || | |||| || |||| Sbjct 4271 TCCGTCGTCTGGCTCGTCGTGGAGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGA 4212 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 4211 CCCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCG 4152 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| ||||| ||||||| ||||||| || | || ||||||| Sbjct 4151 AGCACGCCAAGAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTCAAGCGTCAAG 4092 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || | | || ||||| ||| ||||| | ||| Sbjct 4091 GACGCACCCTGTACGGTTTCGGAGGTTAAGCCTCT 4057 >seq125868 Length=1017 Score = 152 bits (168), Expect = 8e-33 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 482 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTCTCGCTCGCCGTGGCGGCGTC 541 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| || |||| ||||| ||| | ||||| |||||| || Sbjct 542 AAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGATATTCCTCGAG 601 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| ||| | || || |||||||| | ||||| |||||| || Sbjct 602 AACGTCATCCGTGACGCTGTTACTTACACTGAGCACGCCCGCAGGAAGACCGTCACCGCC 661 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 662 ATGGATGTCGTCTATGC 678 >seq56020 Length=450 Score = 152 bits (168), Expect = 8e-33 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || ||| ||||||| | || || ||| Sbjct 333 GATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGCAGAGGCGGCGTC 274 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | || | ||||||||||| || Sbjct 273 AAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGCGTCCTCAAGATCTTCCTTGAG 214 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| ||| | ||| ||||||||||| | |||||||||||| || Sbjct 213 AACGTCATCCGTGACGCTGTGACCTACACCGAGCACGCCCGGAGGAAGACTGTCACCGCC 154 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| |||| ||||| | || | || || | | | |||||||| ||| |||| Sbjct 153 ATGGATGTCGTGTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGTTTCGGAGGTTA 95 >seq19596 Length=803 Score = 152 bits (168), Expect = 8e-33 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || || || ||| ||||||| | || Sbjct 194 TCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGG 253 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| ||||||| | |||||||||||| | | ||| | |||||||| Sbjct 254 CGGCGTCAAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTT 313 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || || ||||||||| | ||||| || Sbjct 314 TCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGCAGGAAGACCGT 373 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | |||||||| ||||| | || || | | | ||||| ||||| Sbjct 374 CACCGCCATGGATGTTGTCTATGCTTTGAAGAGGCAGGGAAGGACTCTCTATGGATTTGG 433 Query 16693 AAGTTAA 16699 ||||| Sbjct 434 GGGTTAA 440 >seq176237 Length=1828 Score = 131 bits (144), Expect = 3e-26 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||| ||||||| | || || ||| Sbjct 192 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGTGTC 133 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | ||| | |||||||| || || Sbjct 132 AAGCGTATCTCGGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTAGAG 73 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||||| ||||||||| | ||||| |||||| || Sbjct 72 AACGTCATCCGTGACGCCGTCACTTATACTGAGCACGCTCGCAGGAAGACGGTCACCGCC 13 Query 16640 ATGGATATCGTC 16651 ||||| ||||| Sbjct 12 ATGGACGTCGTC 1 >seq121387 Length=713 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| || || || ||||| ||||| || || ||||| ||||||| | || Sbjct 245 CTCCGCGATAATATTCAGGGTATCACTAAGCCTGCCATACGTCGGTTGGCTCGCAGAGGA 304 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || ||| ||| | ||||| || | | | ||| | ||||| || Sbjct 305 GGAGTTAAGCGTATCAGTGGCTTGATTTATGAGGAAACAAGAGGTGTGCTCAAGATATTT 364 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || ||| || || | ||| |||||||||||| || |||||||| Sbjct 365 CTCGAGAATGTGATCAGAGACGCCGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTG 424 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| ||||| | || ||| | | | ||||| ||||| Sbjct 425 ACCGCCATGGATGTGGTGTATGCGTTGAAGAGGCAGGGCAGGACTCTCTATGGGTTTGG 483 >seq75664 Length=377 Score = 98.7 bits (108), Expect = 2e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 282 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCATACGCCGTCTCGCTCGCCGTGGC 223 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || | |||| || |||| |||| || | ||||||||| Sbjct 222 GGAGTGAAGAGGATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 163 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| || || | || ||||||||||| | | ||||| || Sbjct 162 CTGGAGAATGTGATCCGCGACGCCGTGACGTACACCGAGCACGCCAGGAGAAAGACGGTG 103 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| ||||||| || | || | |||||| Sbjct 102 ACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAAGGC 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78882482370540