Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq203618 86.0 2e-11 >seq203618 Length=3964 Score = 86.0 bits (94), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| || ||||| || ||| ||| || || || | ||| || | ||| | Sbjct 668 TGCTTCCTTGTATGCATGAAAGATGATAGCATTGAAGGCATATATGATACCTTGAAGGAA 727 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-C 363725 |||||| | || ||| || || ||||||||||| || | ||||| |||||| | Sbjct 728 TGTGCTGTCATCAGCAAATCAGCTGGGGGAATTGGTGTCTCTGTTCACAACATTCGTGCC 787 Query 363726 ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | |||||| ||||| || || | |||| | || ||||| | |||| ||||| | Sbjct 788 ACTG-GCAGTTATATTCGTGGAACAAATGGGACA-TCCAATGGCATCATTCCTATGCTGC 845 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | || ||| | ||||||| | || || || ||||| ||||| || | ||||| Sbjct 846 GAGTTTTTAATGATACTGCCCGTTATGTTGATCAGGGGGGAGGCAAAAGGAAAGG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299833738829960