Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq155400 141 8e-29 seq2159 96.9 3e-15 seq200298 95.1 1e-14 seq58964 91.5 1e-13 seq115308 87.8 2e-12 seq186836 86.0 5e-12 seq6123 86.0 5e-12 seq153096 82.4 7e-11 seq115535 82.4 7e-11 seq520 82.4 7e-11 >seq155400 Length=901 Score = 141 bits (156), Expect = 8e-29 Identities = 176/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| |||||| | || || ||||| | || || || | || || || || ||||| Sbjct 695 AAACAATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGA 636 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | || || |||||||| | |||||| ||||| |||||||||||||| ||||| Sbjct 635 GAGCAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCC 576 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||||||||||||||| | | ||||||||||| ||||||| ||||| | || Sbjct 575 AGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGA 516 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG-ACTAT 24222 ||| ||||| ||||| || || || |||| | ||||| || | || ||||| ||||| Sbjct 515 TTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAACTAT 456 >seq2159 Length=1969 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | ||| Sbjct 1538 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 1479 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | ||||| ||||| ||||| || || || |||| |||| ||| Sbjct 1478 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 1419 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || ||||| || || ||||| || Sbjct 1418 AGGTTGAGGGGTGGAACTATGAT 1396 >seq200298 Length=1237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||||| | || ||||| | ||| Sbjct 725 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 666 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| || |||||||| || || | || | ||||| Sbjct 665 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 606 Query 24204 AGATTGAGAGGAGGACTATAATGATT 24229 || ||||| |||||| | ||||||| Sbjct 605 AGGTTGAGGGGAGGA--ACAATGATT 582 >seq58964 Length=436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | ||||| | ||||| || | Sbjct 328 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 269 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||||| |||||||||||||| || || || || Sbjct 268 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 209 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA-GAAAC-GTCAGCGATTAT 24167 ||||| || || | | || ||||| || || || | || || || | || ||||| Sbjct 208 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCA--GATTAC 151 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || || | ||||| ||| Sbjct 150 AACATTCAGAAAGAGTCGACTCTGCATTTGGTG 118 >seq115308 Length=3903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| || ||| | | Sbjct 3790 ATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 3731 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 3730 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 3671 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||||||||| | || |||| | | | || ||||||||| Sbjct 3670 CAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTATAAC 3611 Query 24171 ATTCAAAAAGAATCTACA 24188 || || || || |||||| Sbjct 3610 ATCCAGAAGGAGTCTACA 3593 >seq186836 Length=3669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || |||| || || | || ||| |||| || ||| | | Sbjct 916 ATGCAGATCTTTGTAAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTAGAGAGCTCC 857 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 856 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAA 797 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || || | | ||| ||||| ||||| || Sbjct 796 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGA 762 >seq6123 Length=1345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || ||| | || || ||| Sbjct 983 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 1042 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| || ||||| || || || || || || Sbjct 1043 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 1102 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| || || |||| | | | | | ||||| ||| Sbjct 1103 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 1162 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || ||||||||||| Sbjct 1163 ATTCAAAAGGAGTCCACCCTTCATTTAGTG 1192 >seq153096 Length=4879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || || | || ||| |||| |||||| | | Sbjct 2988 ATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 3047 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 3048 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 3107 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| | || |||| | ||| | |||||| || Sbjct 3108 CAGAGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGGCCGATTACAAT 3167 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 3168 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 3197 >seq115535 Length=1238 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| |||||| | Sbjct 369 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACTATCACCCTCGAGGTCGAGAGCTCT 428 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| |||||||| || Sbjct 429 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 488 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || || | || ||| ||||| ||||| || Sbjct 489 CAGAGGCTCATATTCGCCGGAAAGCAGCTCGAGGA 523 >seq520 Length=4969 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| || ||| | Sbjct 1818 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 1877 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| || || |||||||| ||||| ||| Sbjct 1878 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGAAAAGGAAGGCATCCCTCCTGAT 1937 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||| ||||| ||||| || | | | | | | ||| || Sbjct 1938 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTAC 1997 Query 24168 AACATTCAAAAAG 24180 ||||| || |||| Sbjct 1998 AACATCCAGAAAG 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428831545470900